BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0551800 Os10g0551800|L27209
(146 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12500.1 | chr4:7414369-7414902 REVERSE LENGTH=178 64 3e-11
AT1G62510.1 | chr1:23136632-23137081 REVERSE LENGTH=150 64 3e-11
AT4G12490.1 | chr4:7409830-7410378 REVERSE LENGTH=183 64 4e-11
AT4G12470.1 | chr4:7401371-7401856 REVERSE LENGTH=162 60 4e-10
AT4G12510.1 | chr4:7417414-7417803 REVERSE LENGTH=130 59 8e-10
AT4G12520.1 | chr4:7421279-7421668 REVERSE LENGTH=130 59 8e-10
AT4G12480.1 | chr4:7406371-7406877 REVERSE LENGTH=169 59 1e-09
AT1G12090.1 | chr1:4090176-4090589 REVERSE LENGTH=138 56 8e-09
AT2G45180.1 | chr2:18626377-18626781 FORWARD LENGTH=135 54 2e-08
AT5G46900.1 | chr5:19039954-19040337 REVERSE LENGTH=128 52 1e-07
AT5G46890.1 | chr5:19036437-19036820 REVERSE LENGTH=128 52 1e-07
AT1G12100.1 | chr1:4095246-4095845 FORWARD LENGTH=133 51 2e-07
>AT4G12500.1 | chr4:7414369-7414902 REVERSE LENGTH=178
Length = 177
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 65 CPIDALKLRVCANVLNGALGVNVGH-GPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVNL 123
CPIDAL+L VCANVL+G L V +G ++ANVLG+NL
Sbjct: 94 CPIDALRLGVCANVLSGLLNVQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGINL 153
Query: 124 NVPVELKLILNKCGKTCPSDFTC 146
NVP+ L ++LN C + PSDF C
Sbjct: 154 NVPISLSVLLNVCNRRLPSDFQC 176
>AT1G62510.1 | chr1:23136632-23137081 REVERSE LENGTH=150
Length = 149
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGHGPYXXXXXXXX-XXXXXXXXXXXXXVKANVLGVN 122
+CP DALKL VCANVLNG L V +G P +KAN+LG+N
Sbjct: 66 KCPRDALKLGVCANVLNGLLNVTLGKPPVEPCCTLIQGLADLEAAACLCTALKANILGIN 125
Query: 123 LNVPVELKLILNKCGKTCPSDFTC 146
LN+P+ L L+LN C K P F C
Sbjct: 126 LNIPLSLSLLLNVCSKKVPRGFQC 149
>AT4G12490.1 | chr4:7409830-7410378 REVERSE LENGTH=183
Length = 182
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 65 CPIDALKLRVCANVLNGALGVNVGH-GPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVNL 123
CPIDAL+L VCANVL+G L V +G P ++ANVLG+NL
Sbjct: 99 CPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSLIQGLVDLDAAVCLCTALRANVLGINL 158
Query: 124 NVPVELKLILNKCGKTCPSDFTC 146
NVP+ L ++LN C + PS+F C
Sbjct: 159 NVPISLSVLLNVCNRRLPSNFQC 181
>AT4G12470.1 | chr4:7401371-7401856 REVERSE LENGTH=162
Length = 161
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGH-GPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVN 122
CPIDALKL VCANVL+ L + +G ++ANVLG+N
Sbjct: 77 SCPIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALRANVLGIN 136
Query: 123 LNVPVELKLILNKCGKTCPSDFTC 146
LNVP+ L ++LN C + PS F C
Sbjct: 137 LNVPISLSVLLNVCNRKLPSGFQC 160
>AT4G12510.1 | chr4:7417414-7417803 REVERSE LENGTH=130
Length = 129
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGHGPYXXXXXXXXXXXXXXXXXXX-XXVKANVLGVN 122
CP D LKL VCANVL L + +G P +KA VLG+N
Sbjct: 45 SCPKDTLKLGVCANVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKVLGIN 104
Query: 123 LNVPVELKLILNKCGKTCPSDFTC 146
LNVPV L L+LN CGK PS F C
Sbjct: 105 LNVPVSLSLLLNVCGKKVPSGFVC 128
>AT4G12520.1 | chr4:7421279-7421668 REVERSE LENGTH=130
Length = 129
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGHGPYXXXXXXXXXXXXXXXXXXX-XXVKANVLGVN 122
CP D LKL VCANVL L + +G P +KA VLG+N
Sbjct: 45 SCPKDTLKLGVCANVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKVLGIN 104
Query: 123 LNVPVELKLILNKCGKTCPSDFTC 146
LNVPV L L+LN CGK PS F C
Sbjct: 105 LNVPVSLSLLLNVCGKKVPSGFVC 128
>AT4G12480.1 | chr4:7406371-7406877 REVERSE LENGTH=169
Length = 168
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 65 CPIDALKLRVCANVLNGALGVNVGH-GPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVNL 123
CPIDAL+L VCANVL+ L + +G ++ANVLG+NL
Sbjct: 85 CPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGINL 144
Query: 124 NVPVELKLILNKCGKTCPSDFTC 146
NVP+ L ++LN C + PS F C
Sbjct: 145 NVPISLSVLLNVCNRKVPSGFQC 167
>AT1G12090.1 | chr1:4090176-4090589 REVERSE LENGTH=138
Length = 137
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 68 DALKLRVCANVLNGALGVNVGHGPYXXXXXXXXXXXXXXXXXXX-XXVKANVLGVNLNVP 126
D LKL VCANVLNG L + +G P +KAN+LG+NLN+P
Sbjct: 58 DTLKLGVCANVLNGLLDLTLGKPPVEPCCSLIQGLADVEAAVCLCTALKANILGINLNLP 117
Query: 127 VELKLILNKCGKTCPSDFTC 146
+ L L+LN C K P F C
Sbjct: 118 ISLSLLLNVCSKQLPPGFQC 137
>AT2G45180.1 | chr2:18626377-18626781 FORWARD LENGTH=135
Length = 134
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGHGPYXXXXXXXXXXXXXXXXXXX-XXVKANVLGVN 122
CP D LKL VCA++L G + V VG P +KANVLG+N
Sbjct: 51 TCPTDTLKLGVCADLL-GLVNVVVGSPPKTPCCTLLQGLANLEAAVCLCTALKANVLGIN 109
Query: 123 LNVPVELKLILNKCGKTCPSDFTC 146
LNVP++L L+LN CGK P F C
Sbjct: 110 LNVPIDLTLLLNYCGKKVPHGFQC 133
>AT5G46900.1 | chr5:19039954-19040337 REVERSE LENGTH=128
Length = 127
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 68 DALKLRVCANVLNGALGVNVGHGPYXXXXXXXX-XXXXXXXXXXXXXVKANVLGVNLNVP 126
DALKL+VCANVL+ V V P +KANVLG+NLNVP
Sbjct: 50 DALKLKVCANVLDL---VKVSLPPTSNCCALIKGLVDLEAAVCLCTALKANVLGINLNVP 106
Query: 127 VELKLILNKCGKTCPSDFTC 146
+ L ++LN CGK PS F C
Sbjct: 107 ISLNVVLNHCGKKVPSGFKC 126
>AT5G46890.1 | chr5:19036437-19036820 REVERSE LENGTH=128
Length = 127
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 68 DALKLRVCANVLNGALGVNVGHGPYXXXXXXXXXXXXXXXXXXX-XXVKANVLGVNLNVP 126
DALKL+VCANVL+ V V P +KANVLG+NLNVP
Sbjct: 50 DALKLKVCANVLDV---VKVSLPPTSNCCALIKGLVDLEAAVCLCTALKANVLGINLNVP 106
Query: 127 VELKLILNKCGKTCPSDFTC 146
+ L ++LN CGK PS F C
Sbjct: 107 ISLNVVLNHCGKKVPSGFKC 126
>AT1G12100.1 | chr1:4095246-4095845 FORWARD LENGTH=133
Length = 132
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGH-GPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVN 122
C DA+KL VCA +L+ A+G +G+ +KAN+LG+N
Sbjct: 48 SCSRDAIKLGVCAKILDVAVGTVIGNPSDTLCCSVLQGLVDLDAAVCLCTTIKANILGIN 107
Query: 123 LNVPVELKLILNKCGKTCPSDFTC 146
+++P+ L L++N CGK PSD C
Sbjct: 108 IDLPISLSLLINTCGKKLPSDCIC 131
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.143 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,657,651
Number of extensions: 29170
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 14
Length of query: 146
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 57
Effective length of database: 8,666,545
Effective search space: 493993065
Effective search space used: 493993065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)