Os04g0612300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cell wall-plasma membrane linker protein homolog.
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Os04g0612300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cell wall-plasma membrane linker protein homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 538.88 | 1.09 | 12.6 | -3.33 | 2.45 | -4.71 | 0.298 | -16.1 | -0.561 | 9.44 | 21.36 | 4320 | 18 | 3 |
| 662.73 | 1.2 | 12.1 | -3.92 | 2.77 | -3.35 | 1.7 | -- | -0.746 | 8.81 | 9.008 | 47520 | 18.5 | 1.46 |
| 539.15 | 1.08 | 12.6 | -3.33 | 2.45 | -4.71 | -- | -16.1 | -0.561 | 9.44 | 22.95 | 4320 | 18 | 3 |
| 626.95 | 1.17 | 12.1 | -5.44 | 3.11 | -2.91 | -- | -- | -1.06 | 8.76 | 4.432 | 47520 | 18.5 | 2.02 |
| 802.84 | 1.32 | 12.6 | -2.9 | -- | -6.13 | -- | -16.4 | -0.31 | -- | 66.48 | 4320 | 18 | 4.8 |
| 826.47 | 1.35 | 12 | -6.05 | 2.62 | -- | 0.812 | -- | -0.556 | 8.95 | -- | -- | -- | -- |
| 828.61 | 1.35 | 12 | -6.02 | 2.61 | -- | -- | -- | -0.555 | 9.02 | -- | -- | -- | -- |
| 866.68 | 1.37 | 12 | -3.13 | -- | -5.34 | -- | -- | 0.0304 | -- | 37.92 | 4324 | 17.9 | 6.36 |
| 888.16 | 1.39 | 11.9 | -- | 2.45 | -6.4 | -- | -- | -0.118 | 9.35 | 82.54 | 47520 | 17.9 | 4.13 |
| 1220.28 | 1.63 | 12.1 | -6.03 | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
| 1784.92 | 1.98 | 11.9 | -- | 2.61 | -- | -- | -- | 0.116 | 9.19 | -- | -- | -- | -- |
| 1021.43 | 1.49 | 11.8 | -- | -- | -7.61 | -- | -- | 0.878 | -- | 25.05 | 4323 | 17.9 | 9.02 |
| 2178.59 | 2.18 | 11.9 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 513.60 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 2 | 513.78 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 3 | 518.03 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 5 | 518.45 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 7 | 519.08 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 8 | 519.16 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 14 | 520.52 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 6 |
| 15 | 520.55 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 28 | 523.55 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 30 | 524.30 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 31 | 524.66 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 32 | 524.90 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 33 | 524.92 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 37 | 525.72 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 61 | 528.36 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 86 | 530.23 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 10 |
| 138 | 533.16 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 219 | 537.49 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 225 | 537.64 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 245 | 538.95 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 257 | 539.62 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 275 | 540.13 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 302 | 541.51 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 312 | 541.95 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 313 | 541.95 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 378 | 544.42 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 397 | 545.21 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 399 | 545.36 | wind | 1.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 447 | 547.27 | wind | 9.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 560 | 552.11 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 568 | 552.50 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 570 | 552.55 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 590 | 553.62 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 598 | 553.96 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 613 | 554.69 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 627 | 555.06 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 656 | 555.86 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 672 | 556.35 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 684 | 556.61 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 688 | 556.73 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 694 | 556.78 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 721 | 557.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 734 | 557.33 | humidity | 90.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 735 | 557.33 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 737 | 557.41 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 784 | 558.56 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 811 | 559.11 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 831 | 559.31 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 850 | 559.54 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 864 | 559.83 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 13 |
| 867 | 559.89 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 874 | 559.99 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 878 | 560.14 | humidity | 90.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 886 | 560.22 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 894 | 560.40 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 916 | 560.72 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 923 | 560.80 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 926 | 560.80 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 936 | 560.96 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 945 | 561.05 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 952 | 561.10 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 965 | 561.22 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 977 | 561.42 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 999 | 561.64 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |