BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0612300 Os04g0612300|Os04g0612300
(202 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22120.1 | chr3:7795283-7796287 REVERSE LENGTH=335 77 9e-15
AT4G12500.1 | chr4:7414369-7414902 REVERSE LENGTH=178 74 6e-14
AT4G12490.1 | chr4:7409830-7410378 REVERSE LENGTH=183 71 3e-13
AT1G62510.1 | chr1:23136632-23137081 REVERSE LENGTH=150 69 1e-12
AT2G45180.1 | chr2:18626377-18626781 FORWARD LENGTH=135 69 2e-12
AT4G12480.1 | chr4:7406371-7406877 REVERSE LENGTH=169 69 2e-12
AT4G12510.1 | chr4:7417414-7417803 REVERSE LENGTH=130 68 4e-12
AT4G12520.1 | chr4:7421279-7421668 REVERSE LENGTH=130 68 4e-12
AT4G15160.1 | chr4:8646192-8647019 FORWARD LENGTH=276 67 7e-12
AT4G12470.1 | chr4:7401371-7401856 REVERSE LENGTH=162 67 8e-12
AT2G10940.1 | chr2:4311160-4312035 REVERSE LENGTH=292 65 3e-11
AT3G22142.1 | chr3:7803604-7808046 REVERSE LENGTH=1481 65 3e-11
AT1G12090.1 | chr1:4090176-4090589 REVERSE LENGTH=138 64 6e-11
AT1G62500.1 | chr1:23132181-23133074 FORWARD LENGTH=298 64 7e-11
AT4G22460.1 | chr4:11839160-11839561 REVERSE LENGTH=134 60 5e-10
AT4G00165.1 | chr4:69433-69819 REVERSE LENGTH=129 59 2e-09
AT1G12100.1 | chr1:4095246-4095845 FORWARD LENGTH=133 56 1e-08
AT4G12530.1 | chr4:7428141-7428494 REVERSE LENGTH=118 54 7e-08
AT4G12550.1 | chr4:7439176-7439511 FORWARD LENGTH=112 52 2e-07
AT5G46900.1 | chr5:19039954-19040337 REVERSE LENGTH=128 52 2e-07
AT5G46890.1 | chr5:19036437-19036820 REVERSE LENGTH=128 51 4e-07
>AT3G22120.1 | chr3:7795283-7796287 REVERSE LENGTH=335
Length = 334
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 112 CPVDTLKLLACVDALNGLVHAVVGAT-AGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
CP+DTLKL ACVD L GL+H +G + A CCP+L G+ T IK K L +
Sbjct: 250 CPIDTLKLGACVDVLGGLIHIGLGKSHAKAECCPVLGGLLDLDAAVCLCTTIKLKLLNID 309
Query: 171 LVLPVAISVLVNDCGKYVPSDFQCPS 196
LVLP+A+ +L+ DCGK PSDF+CP+
Sbjct: 310 LVLPIALELLL-DCGKTPPSDFKCPA 334
>AT4G12500.1 | chr4:7414369-7414902 REVERSE LENGTH=178
Length = 177
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G CP+D L+L C + L+GL++ +G + CC L+ G+ TA++A LG+
Sbjct: 92 GNCPIDALRLGVCANVLSGLLNVQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGI 151
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L +P+++SVL+N C + +PSDFQC
Sbjct: 152 NLNVPISLSVLLNVCNRRLPSDFQC 176
>AT4G12490.1 | chr4:7409830-7410378 REVERSE LENGTH=183
Length = 182
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G CP+D L+L C + L+GL++ +G + CC L+ G+ TA++A LG+
Sbjct: 97 GNCPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSLIQGLVDLDAAVCLCTALRANVLGI 156
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L +P+++SVL+N C + +PS+FQC
Sbjct: 157 NLNVPISLSVLLNVCNRRLPSNFQC 181
>AT1G62510.1 | chr1:23136632-23137081 REVERSE LENGTH=150
Length = 149
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%)
Query: 111 KCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
KCP D LKL C + LNGL++ +G + CC L+ G+ TA+KA LG++
Sbjct: 66 KCPRDALKLGVCANVLNGLLNVTLGKPPVEPCCTLIQGLADLEAAACLCTALKANILGIN 125
Query: 171 LVLPVAISVLVNDCGKYVPSDFQC 194
L +P+++S+L+N C K VP FQC
Sbjct: 126 LNIPLSLSLLLNVCSKKVPRGFQC 149
>AT2G45180.1 | chr2:18626377-18626781 FORWARD LENGTH=135
Length = 134
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 112 CPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLSL 171
CP DTLKL C D L GLV+ VVG+ CC LL G+ TA+KA LG++L
Sbjct: 52 CPTDTLKLGVCADLL-GLVNVVVGSPPKTPCCTLLQGLANLEAAVCLCTALKANVLGINL 110
Query: 172 VLPVAISVLVNDCGKYVPSDFQC 194
+P+ +++L+N CGK VP FQC
Sbjct: 111 NVPIDLTLLLNYCGKKVPHGFQC 133
>AT4G12480.1 | chr4:7406371-7406877 REVERSE LENGTH=169
Length = 168
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G CP+D L+L C + L+ L++ +G + CC L+ G+ TA++A LG+
Sbjct: 83 GNCPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGI 142
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L +P+++SVL+N C + VPS FQC
Sbjct: 143 NLNVPISLSVLLNVCNRKVPSGFQC 167
>AT4G12510.1 | chr4:7417414-7417803 REVERSE LENGTH=130
Length = 129
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G CP DTLKL C + L L+ +G CC LL+G+ TA+KAK LG+
Sbjct: 44 GSCPKDTLKLGVCANVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKVLGI 103
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L +PV++S+L+N CGK VPS F C
Sbjct: 104 NLNVPVSLSLLLNVCGKKVPSGFVC 128
>AT4G12520.1 | chr4:7421279-7421668 REVERSE LENGTH=130
Length = 129
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G CP DTLKL C + L L+ +G CC LL+G+ TA+KAK LG+
Sbjct: 44 GSCPKDTLKLGVCANVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKVLGI 103
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L +PV++S+L+N CGK VPS F C
Sbjct: 104 NLNVPVSLSLLLNVCGKKVPSGFVC 128
>AT4G15160.1 | chr4:8646192-8647019 FORWARD LENGTH=276
Length = 275
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 112 CPVDTLKLLACVDALNGLVHAVVGAT-AGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
CP+D LKL ACVD L GL+H +G + A CCPLL + T I+AK L +
Sbjct: 181 CPIDALKLGACVDVLGGLIHIGLGKSYAKAKCCPLLDDLVGLDAAVCLCTTIRAKLLNID 240
Query: 171 LVLPVAISVLVNDCGKY-VPSDFQCPS 196
L++P+A+ VLV DCGK P F+CP+
Sbjct: 241 LIIPIALEVLV-DCGKTPPPRGFKCPT 266
>AT4G12470.1 | chr4:7401371-7401856 REVERSE LENGTH=162
Length = 161
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
CP+D LKL C + L+ L++ +G + CC L+ G+ TA++A LG+
Sbjct: 76 NSCPIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALRANVLGI 135
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L +P+++SVL+N C + +PS FQC
Sbjct: 136 NLNVPISLSVLLNVCNRKLPSGFQC 160
>AT2G10940.1 | chr2:4311160-4312035 REVERSE LENGTH=292
Length = 291
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 112 CPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLSL 171
CP+DTLKL ACVD L GLV +G A + CCPLL G+ T +K KAL L+L
Sbjct: 208 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLKLKALDLNL 267
Query: 172 VLPVAISVLVNDCGKYVPSDFQC 194
+PVA+ +L+ CGK P + C
Sbjct: 268 YVPVALQLLLT-CGKNPPPGYTC 289
>AT3G22142.1 | chr3:7803604-7808046 REVERSE LENGTH=1481
Length = 1480
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 21/95 (22%)
Query: 112 CPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGV----------XXXXXXXXXXTA 161
CP+DTLKL +CVD L GLVH +G +A + CCP++ G+ T
Sbjct: 1397 CPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLC----------TT 1446
Query: 162 IKAKALGLSLVLPVAISVLVNDCGKYVPSDFQCPS 196
IKAK L + ++LP+A+ VL+N CGK P F+CP+
Sbjct: 1447 IKAKLLNIDVILPIALEVLLN-CGKNPPPGFKCPA 1480
>AT1G12090.1 | chr1:4090176-4090589 REVERSE LENGTH=138
Length = 137
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 115 DTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLSLVLP 174
DTLKL C + LNGL+ +G + CC L+ G+ TA+KA LG++L LP
Sbjct: 58 DTLKLGVCANVLNGLLDLTLGKPPVEPCCSLIQGLADVEAAVCLCTALKANILGINLNLP 117
Query: 175 VAISVLVNDCGKYVPSDFQC 194
+++S+L+N C K +P FQC
Sbjct: 118 ISLSLLLNVCSKQLPPGFQC 137
>AT1G62500.1 | chr1:23132181-23133074 FORWARD LENGTH=298
Length = 297
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 112 CPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLSL 171
CP++ LKL ACVD L GL+H +G + CCP+L G+ T I+ K L L++
Sbjct: 212 CPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIRLKLLNLNI 271
Query: 172 VLPVAISVLVNDCGKYVPSDFQCP 195
+P+A+ L+ CG PS F CP
Sbjct: 272 FIPLALQALIT-CGINPPSGFVCP 294
>AT4G22460.1 | chr4:11839160-11839561 REVERSE LENGTH=134
Length = 133
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G CP D LK+ CV+ALN L G CC L+ G+ TA+KA LG+
Sbjct: 48 GTCPKDALKVGVCVNALNLLNGLTPGTPPVTPCCSLIEGLVDLEAAICLCTALKASVLGI 107
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQCP 195
+L LP+ +S+L+N C + DFQ P
Sbjct: 108 NLTLPINLSLLLNICNREASRDFQFP 133
>AT4G00165.1 | chr4:69433-69819 REVERSE LENGTH=129
Length = 128
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 111 KCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
KCP DTLK C L GLV V+G CC L+ G+ TA+K LG++
Sbjct: 45 KCPRDTLKFGVCGSWL-GLVSEVIGTPPSQECCSLIKGLADFEAAVCLCTALKTSILGVA 103
Query: 171 LV-LPVAISVLVNDCGKYVPSDFQC 194
V +PVA+++L+N CGK VP F C
Sbjct: 104 PVKIPVALTLLLNSCGKNVPQGFVC 128
>AT1G12100.1 | chr1:4095246-4095845 FORWARD LENGTH=133
Length = 132
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 111 KCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
C D +KL C L+ V V+G + CC +L G+ T IKA LG++
Sbjct: 48 SCSRDAIKLGVCAKILDVAVGTVIGNPSDTLCCSVLQGLVDLDAAVCLCTTIKANILGIN 107
Query: 171 LVLPVAISVLVNDCGKYVPSDFQC 194
+ LP+++S+L+N CGK +PSD C
Sbjct: 108 IDLPISLSLLINTCGKKLPSDCIC 131
>AT4G12530.1 | chr4:7428141-7428494 REVERSE LENGTH=118
Length = 117
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
CP D LKL C + LN L++ +GA A CC +L G+ TA+K LG+
Sbjct: 32 NTCPRDVLKLSTCSNVLN-LINLKLGAPAMRPCCSILFGLIDLDVAVCLCTALKLSLLGI 90
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQCPS 196
++ P+ +++ +N CG +P F+CP+
Sbjct: 91 TIDTPIHLNLALNACGGTLPDGFRCPT 117
>AT4G12550.1 | chr4:7439176-7439511 FORWARD LENGTH=112
Length = 111
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G CP +++++ CV LN LV +G CC L+ G+ TA+KA LG+
Sbjct: 26 GTCPKNSIEIGTCVTVLN-LVDLTLGNPPVKPCCSLIQGLADLEAAVCLCTAVKASILGI 84
Query: 170 -SLVLPVAISVLVNDCGKYVPSDFQC 194
++ LP+ +SVL+N C + P FQC
Sbjct: 85 VNINLPINLSVLLNVCSRNAPKSFQC 110
>AT5G46900.1 | chr5:19039954-19040337 REVERSE LENGTH=128
Length = 127
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 115 DTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLSLVLP 174
D LKL C + L+ LV + T+ CC L+ G+ TA+KA LG++L +P
Sbjct: 50 DALKLKVCANVLD-LVKVSLPPTSN--CCALIKGLVDLEAAVCLCTALKANVLGINLNVP 106
Query: 175 VAISVLVNDCGKYVPSDFQC 194
++++V++N CGK VPS F+C
Sbjct: 107 ISLNVVLNHCGKKVPSGFKC 126
>AT5G46890.1 | chr5:19036437-19036820 REVERSE LENGTH=128
Length = 127
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 115 DTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLSLVLP 174
D LKL C + L+ + V CC L+ G+ TA+KA LG++L +P
Sbjct: 50 DALKLKVCANVLDVVK---VSLPPTSNCCALIKGLVDLEAAVCLCTALKANVLGINLNVP 106
Query: 175 VAISVLVNDCGKYVPSDFQC 194
++++V++N CGK VPS F+C
Sbjct: 107 ISLNVVLNHCGKKVPSGFKC 126
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,090,577
Number of extensions: 49494
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 22
Length of query: 202
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 108
Effective length of database: 8,529,465
Effective search space: 921182220
Effective search space used: 921182220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)