BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0612300 Os04g0612300|Os04g0612300
(202 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0612300 Similar to Cell wall-plasma membrane linker pr... 157 4e-39
Os04g0612500 Similar to Prolin rich protein 85 4e-17
Os10g0552300 Similar to Root-specific protein (RCc2 protein) 78 4e-15
Os06g0168700 Similar to Prolin rich protein 78 5e-15
AK059170 78 5e-15
Os10g0349300 Similar to Root-specific protein (RCc2 protein) 77 7e-15
Os03g0103300 Plant lipid transfer/seed storage/trypsin-alph... 77 8e-15
Os10g0551900 Plant lipid transfer/seed storage/trypsin-alph... 75 4e-14
Os10g0349800 73 1e-13
Os10g0349900 Similar to NT16 polypeptide 73 2e-13
Os04g0554600 Similar to RCc3 protein 72 3e-13
Os03g0103100 Similar to Physical impedance induced protein 72 3e-13
Os04g0554500 Similar to RCc3 protein 72 3e-13
Os10g0552100 Similar to NT16 polypeptide 71 6e-13
Os10g0552200 Plant lipid transfer/seed storage/trypsin-alph... 71 6e-13
Os10g0552700 Similar to Tumor-related protein (Fragment) 70 8e-13
Os03g0103200 Similar to Physical impedance induced protein 70 1e-12
Os02g0662000 RCc3 protein 70 1e-12
Os10g0349400 70 1e-12
Os10g0554800 Similar to ExtA 69 2e-12
Os10g0552600 Similar to Tfm5 protein 69 2e-12
Os02g0662100 Similar to Tfm5 protein 68 4e-12
Os10g0552800 Similar to Tfm5 protein 68 6e-12
Os04g0554800 Similar to RCc3 protein 67 9e-12
Os06g0104800 67 1e-11
>Os04g0612300 Similar to Cell wall-plasma membrane linker protein homolog
Length = 202
Score = 157 bits (398), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/93 (89%), Positives = 83/93 (89%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGV TAIKAKALGL
Sbjct: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVADLDAALCLCTAIKAKALGL 169
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQCPSTDPPYI 202
SLVLPVAISVLVNDCGKYVPSDFQCPSTDPPYI
Sbjct: 170 SLVLPVAISVLVNDCGKYVPSDFQCPSTDPPYI 202
>Os04g0612500 Similar to Prolin rich protein
Length = 64
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 50/62 (80%)
Query: 118 KLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLSLVLPVAI 177
KLLACVDALNGLVHAVVGA A DTCCPLLSGV TAIKAKALG+SLVLPVAI
Sbjct: 1 KLLACVDALNGLVHAVVGAKASDTCCPLLSGVADLDAALCLCTAIKAKALGVSLVLPVAI 60
Query: 178 SV 179
S+
Sbjct: 61 SL 62
>Os10g0552300 Similar to Root-specific protein (RCc2 protein)
Length = 136
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G+CP+D LKL C + LNGLV +GA D CCPLLSG+ TA+KA LG+
Sbjct: 53 GRCPIDALKLRVCTNVLNGLVGVKIGAGP-DDCCPLLSGLADLDAAVCLCTAVKANVLGM 111
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
L L V +S+++N CGK PSDF C
Sbjct: 112 KLNLAVDLSLILNKCGKICPSDFTC 136
>Os06g0168700 Similar to Prolin rich protein
Length = 246
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 112 CPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLSL 171
CP+D LKL ACVD L GL+H V+G A CCPL+ GV T I+A+ L +++
Sbjct: 159 CPIDALKLNACVDVLGGLIHLVIGQKARAKCCPLVQGVADLDAALCLCTTIRARLLNINI 218
Query: 172 VLPVAISVLVNDCGKYVPSDFQCP 195
LPVA+ +L+ CGK+ P F+CP
Sbjct: 219 YLPVALELLIT-CGKHPPPGFKCP 241
>AK059170
Length = 246
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 112 CPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLSL 171
CP+D LKL ACVD L GL+H V+G A CCPL+ GV T I+A+ L +++
Sbjct: 159 CPIDALKLNACVDVLGGLIHLVIGQKARAKCCPLVQGVADLDAALCLCTTIRARLLNINI 218
Query: 172 VLPVAISVLVNDCGKYVPSDFQCP 195
LPVA+ +L+ CGK+ P F+CP
Sbjct: 219 YLPVALELLIT-CGKHPPPGFKCP 241
>Os10g0349300 Similar to Root-specific protein (RCc2 protein)
Length = 137
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 111 KCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
+CP++TLKL C + LNGLV A +G D CC LLSG+ TA+KA LG+
Sbjct: 55 RCPINTLKLRVCANVLNGLVDAKIGH-GTDDCCSLLSGIADLDAAVCLCTAVKANVLGIR 113
Query: 171 LVLPVAISVLVNDCGKYVPSDFQC 194
+ LPV +S+++N CGK PSDF C
Sbjct: 114 VNLPVDLSIMLNKCGKTCPSDFTC 137
>Os03g0103300 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 184
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 111 KCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
+CP+DTLKL C + LNGL++ +G CC L+ G+ TA++A LG++
Sbjct: 99 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRANILGIN 158
Query: 171 LVLPVAISVLVNDCGKYVPSDFQC 194
L LP+ +S+LVN CG+ VPS FQC
Sbjct: 159 LNLPINLSLLVNYCGRSVPSGFQC 182
>Os10g0551900 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 142
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 111 KCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALG-L 169
+CP+D LKL C + LNGLV +GA D CCPLLSG+ TAIKA LG +
Sbjct: 59 RCPIDALKLRVCANVLNGLVGVKIGA-GPDDCCPLLSGLADLDAAVCLCTAIKANVLGII 117
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L +PV +S+++N+CGK PSDF C
Sbjct: 118 NLNIPVDLSLILNNCGKICPSDFTC 142
>Os10g0349800
Length = 130
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G+CP+D LKL C + L GLV +G D CC LLSG+ TA+KA LG+
Sbjct: 47 GRCPMDALKLRVCANVLKGLVDVEIG-HGPDDCCSLLSGIADIDAAVCLCTAVKANVLGI 105
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+ LPV +S+++N CGK PSDF C
Sbjct: 106 RVNLPVDLSLILNKCGKTCPSDFTC 130
>Os10g0349900 Similar to NT16 polypeptide
Length = 126
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G+CP+D LKL C + LNGL+ +G D CCPLL+G+ TA+KA LGL
Sbjct: 42 GRCPIDALKLRVCANLLNGLIGVKIG-RGPDDCCPLLAGIADLDAAVCLCTALKANVLGL 100
Query: 170 -SLVLPVAISVLVNDCGKYVPSDFQC 194
+L LPV +S+++N CGK PS F C
Sbjct: 101 INLNLPVDLSIILNKCGKNYPSGFTC 126
>Os04g0554600 Similar to RCc3 protein
Length = 131
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
GKCP D LKL C + L GL+ A VG + CCPLL G+ TAIK LG+
Sbjct: 47 GKCPRDALKLGVCANVL-GLIKAKVGVPPAEPCCPLLEGLVDLEAAVCLCTAIKGNILGI 105
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L LPV +S+++N CGK VP+ F+C
Sbjct: 106 NLNLPVDLSLILNYCGKRVPTGFKC 130
>Os03g0103100 Similar to Physical impedance induced protein
Length = 138
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
KCP+D LKL C + LN L+ +G + CCPLL G+ TAIKA LG+
Sbjct: 53 NKCPIDALKLSVCANVLN-LLKLKIGVPESEQCCPLLGGLVDLDAAVCLCTAIKANILGI 111
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQCP 195
+L +PV +S+L+N C K PSDF CP
Sbjct: 112 NLNIPVDLSLLLNYCHKTCPSDFTCP 137
>Os04g0554500 Similar to RCc3 protein
Length = 130
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
GKCP D LKL C + L GL+ A VG + CCPLL G+ TAI+ LG+
Sbjct: 47 GKCPRDALKLGVCANVL-GLIKAKVGVPPAEPCCPLLEGLVDLEAAVCLCTAIRGNILGI 105
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L LPV +S+++N CGK VP+ F+C
Sbjct: 106 NLNLPVDLSLILNYCGKRVPTGFKC 130
>Os10g0552100 Similar to NT16 polypeptide
Length = 131
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G CP+D LKL C + LNGLV +GA + CC LL G+ TA+KA LG+
Sbjct: 48 GHCPIDALKLRVCANVLNGLVGVKIGAGPNE-CCSLLQGIADLDAAVCLCTAVKANVLGI 106
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L LPV +S+++N C K PS F C
Sbjct: 107 NLNLPVDLSLILNKCNKIYPSGFTC 131
>Os10g0552200 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 131
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G CP+D LKL C + LNGLV +GA + CC LL G+ TA+KA LG+
Sbjct: 48 GHCPIDALKLRVCANVLNGLVGVKIGAGPNE-CCSLLQGIADLDAAVCLCTAVKANVLGI 106
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L LPV +S+++N C K PS F C
Sbjct: 107 NLNLPVDLSLILNKCSKIYPSGFTC 131
>Os10g0552700 Similar to Tumor-related protein (Fragment)
Length = 124
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAG-DTCCPLLSGVXXXXXXXXXXTAIKAKALG 168
G CP D LKL C + L GLV A VGA A + CC LL G+ TA+KA LG
Sbjct: 38 GSCPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSLLDGLVDLDAAVCLCTAVKANVLG 96
Query: 169 LSLVLPVAISVLVNDCGKYVPSDFQC 194
+ L LPV +S+++N+CGK PSDF+C
Sbjct: 97 IKLDLPVDLSLILNNCGKICPSDFKC 122
>Os03g0103200 Similar to Physical impedance induced protein
Length = 141
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
KCP+D LKL C + LN L+ VG A + CCPLL G+ TAIKA LG+
Sbjct: 55 NKCPIDALKLGVCANVLN-LLKLKVGVPASEECCPLLGGLVDLDAAVCLCTAIKANVLGI 113
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQCP 195
++ +PV + +L+N C K PSDF CP
Sbjct: 114 NINVPVDLVLLLNYCHKTCPSDFSCP 139
>Os02g0662000 RCc3 protein
Length = 133
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
G+CP D LKL C + L GL+ A VG + CCPLL G+ TAI+ LG+
Sbjct: 50 GRCPRDALKLGVCANVL-GLIKAKVGVPPAEPCCPLLEGLVDLEAAVCLCTAIRGNILGI 108
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L LP+ +S+++N CGK VP+ F+C
Sbjct: 109 NLNLPIDLSLILNYCGKTVPTGFKC 133
>Os10g0349400
Length = 137
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 111 KCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
+CP++ LKL C + LN LV +G D CC LLSG+ TA+KA LG+
Sbjct: 55 RCPINALKLRVCANVLNRLVDVKIG-HGPDDCCSLLSGIADLDAAVCLCTAVKANVLGIR 113
Query: 171 LVLPVAISVLVNDCGKYVPSDFQC 194
+ LPV +S+++N CGK PSDF C
Sbjct: 114 VNLPVDLSLILNKCGKSCPSDFTC 137
>Os10g0554800 Similar to ExtA
Length = 167
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 111 KCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
KCP D LKL C + L+ L+ A G A + CCPLL+G+ TAIKA LG++
Sbjct: 84 KCPTDALKLGVCANVLD-LIKAKAGVPATEPCCPLLNGLVDLEAAVCLCTAIKANVLGIN 142
Query: 171 LVLPVAISVLVNDCGKYVPSDFQC 194
L LP+ +S+++N CGK VP+ F C
Sbjct: 143 LNLPIHLSLILNFCGKGVPTGFMC 166
>Os10g0552600 Similar to Tfm5 protein
Length = 133
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 112 CPVDTLKLLACVDALNGLVHAVVGATA-GDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
CP D LKL C + L GLV A +GA A + CC LL G+ TAIKA LGL+
Sbjct: 50 CPRDALKLHVCANVL-GLVKAKIGAVAPYEPCCSLLDGLVDLDAAVCLCTAIKANVLGLN 108
Query: 171 LVLPVAISVLVNDCGKYVPSDFQC 194
L +P+ +S+++N+CGK PSD+QC
Sbjct: 109 LNIPIDLSLILNNCGKICPSDYQC 132
>Os02g0662100 Similar to Tfm5 protein
Length = 128
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 111 KCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
KCP + LK AC D L GLV A VG + CC +L G+ TAIKA LG++
Sbjct: 45 KCPKNALKFAACADVL-GLVSAEVGQPPYEPCCGVLGGLADLEAAVCLCTAIKANVLGIT 103
Query: 171 LVLPVAISVLVNDCGKYVPSDFQC 194
L +PV +S+LVN CGK VPS F C
Sbjct: 104 LDIPVKLSLLVNYCGKNVPSGFIC 127
>Os10g0552800 Similar to Tfm5 protein
Length = 132
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 112 CPVDTLKLLACVDALNGLVHAVVGATA-GDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
CP D LKL C + L GLV A VGA + + CC LL G+ TAIKA LG+
Sbjct: 48 CPRDALKLHVCANVL-GLVKAKVGAVSPYEPCCSLLDGLVDLDAAVCLCTAIKANVLGIK 106
Query: 171 LVLPVAISVLVNDCGKYVPSDFQC 194
L LP+ +S+++N+CGK PSD+QC
Sbjct: 107 LNLPIDLSLILNNCGKICPSDYQC 130
>Os04g0554800 Similar to RCc3 protein
Length = 137
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 111 KCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGLS 170
KCPV+TLK AC D L G + VG CC L+SG+ TAIKA LG+
Sbjct: 54 KCPVNTLKFGACADVL-GAISGEVGQVPAQPCCSLISGLADLEAAVCLCTAIKANVLGVV 112
Query: 171 LVLPVAISVLVNDCGKYVPSDFQC 194
+ +PV +S+LVN CGK VPS + C
Sbjct: 113 VNIPVKLSLLVNYCGKCVPSGYTC 136
>Os06g0104800
Length = 122
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLSGVXXXXXXXXXXTAIKAKALGL 169
GKCP++T+KL C D L+GL+HA + CCPL++G+ AI A LGL
Sbjct: 39 GKCPINTVKLGVCADVLDGLIHA--STPPKEPCCPLIAGLADLDAAVCVCLAINANLLGL 96
Query: 170 SLVLPVAISVLVNDCGKYVPSDFQC 194
+L +PV +S+L+N CG +P+ F+C
Sbjct: 97 NLDVPVDLSLLLNYCGCKLPAGFKC 121
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,427,516
Number of extensions: 80672
Number of successful extensions: 203
Number of sequences better than 1.0e-10: 29
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 29
Length of query: 202
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,023,257
Effective search space: 1274465242
Effective search space used: 1274465242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)