Os04g0612500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Prolin rich protein.
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Os04g0612500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Prolin rich protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 666.96 | 1.21 | 13.6 | -2.24 | 3.87 | -4.46 | -1.54 | -17.1 | -1.44 | 11.1 | 1 | 4322 | 18 | 4.98 |
| 901.15 | 1.4 | 13.6 | -2.22 | 3.74 | -3.99 | -1.79 | -- | -1.37 | 11.1 | 0.925 | 4325 | 17.9 | 5 |
| 676.37 | 1.21 | 13.6 | -2.25 | 3.88 | -4.46 | -- | -16.9 | -1.43 | 11.1 | 0.9987 | 4322 | 18 | 4.96 |
| 807.15 | 1.32 | 13.5 | -3.53 | 3.64 | -3.34 | -- | -- | -1.95 | 11.7 | 1.046 | 4321 | 17.6 | 6.44 |
| 1313.86 | 1.7 | 13.6 | -5.08 | -- | -2.67 | -- | 0.515 | -2.02 | -- | 0.8507 | 7269 | 18 | 6.31 |
| 1022.26 | 1.5 | 13.4 | -4.88 | 3.83 | -- | -1.58 | -- | -1.84 | 10.9 | -- | -- | -- | -- |
| 1032.54 | 1.5 | 13.4 | -4.95 | 3.84 | -- | -- | -- | -1.85 | 10.8 | -- | -- | -- | -- |
| 1018.65 | 1.49 | 13.5 | -4.58 | -- | -3.59 | -- | -- | -1.53 | -- | 119 | 1860 | 14.3 | 9.92 |
| 1081.64 | 1.53 | 13.5 | -- | 3.54 | -3.64 | -- | -- | -1.7 | 11 | 2.286 | 4319 | 17.5 | 6.57 |
| 1946.67 | 2.06 | 13.5 | -5.03 | -- | -- | -- | -- | -1.87 | -- | -- | -- | -- | -- |
| 1678 | 1.92 | 13.3 | -- | 3.88 | -- | -- | -- | -1.3 | 10.9 | -- | -- | -- | -- |
| 1597.63 | 1.86 | 13.5 | -- | -- | -4.99 | -- | -- | -1.48 | -- | 19.09 | 1840 | 15.7 | 7.87 |
| 2613.57 | 2.39 | 13.4 | -- | -- | -- | -- | -- | -1.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 654.96 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 2 | 660.01 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 3 | 660.39 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 9 | 660.62 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 13 | 660.99 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 15 | 661.64 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 18 | 663.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 20 | 663.55 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 21 | 663.55 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 24 | 664.57 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 26 | 665.72 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 28 | 666.21 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 43 | 668.19 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 48 | 669.72 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 51 | 671.13 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 6 |
| 53 | 671.46 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 54 | 671.77 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 56 | 673.85 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 63 | 675.06 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 71 | 675.79 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 86 | 677.21 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 87 | 677.30 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 102 | 678.12 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 105 | 678.33 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 110 | 678.76 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 122 | 679.85 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 128 | 680.06 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 133 | 680.08 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 16 |
| 144 | 680.20 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 145 | 680.29 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 162 | 680.46 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 167 | 680.79 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 172 | 680.91 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 173 | 680.92 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 174 | 680.97 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 219 | 681.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 221 | 681.70 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 265 | 682.01 | temperature | 30.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 278 | 682.49 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 309 | 682.62 | temperature | 30.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 341 | 683.41 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 360 | 683.54 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 362 | 683.58 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 384 | 683.75 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 440 | 684.36 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 443 | 684.41 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 484 | 685.01 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 488 | 685.13 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 494 | 685.16 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 499 | 685.17 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 24 | 17 |
| 535 | 685.46 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 4 | 18 |
| 542 | 685.46 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 575 | 685.48 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 672 | 686.13 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 692 | 686.44 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 809 | 686.71 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 812 | 686.81 | humidity | 70.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 829 | 686.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 852 | 687.16 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 855 | 687.22 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 856 | 687.25 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 958 | 689.76 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 962 | 689.85 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 970 | 689.98 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 985 | 690.12 | humidity | 70.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 988 | 690.23 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 3 |