BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0612500 Os04g0612500|AK062295
         (64 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0612500  Similar to Prolin rich protein                       97   2e-21
Os04g0612300  Similar to Cell wall-plasma membrane linker pr...    86   9e-18

>Os04g0612500 Similar to Prolin rich protein
          Length = 64

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 54/64 (84%)

Query: 1  KLLACVDALNGLVHAVVGAKASDTCCPLLSGVXXXXXXXXXXTAIKAKALGVSLVLPVAI 60
          KLLACVDALNGLVHAVVGAKASDTCCPLLSGV          TAIKAKALGVSLVLPVAI
Sbjct: 1  KLLACVDALNGLVHAVVGAKASDTCCPLLSGVADLDAALCLCTAIKAKALGVSLVLPVAI 60

Query: 61 SLHN 64
          SLHN
Sbjct: 61 SLHN 64



>Os04g0612300 Similar to Cell wall-plasma membrane linker protein homolog
          Length = 202

 Score = 85.5 bits (210), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 50/62 (80%)

Query: 1   KLLACVDALNGLVHAVVGAKASDTCCPLLSGVXXXXXXXXXXTAIKAKALGVSLVLPVAI 60
           KLLACVDALNGLVHAVVGA A DTCCPLLSGV          TAIKAKALG+SLVLPVAI
Sbjct: 118 KLLACVDALNGLVHAVVGATAGDTCCPLLSGVADLDAALCLCTAIKAKALGLSLVLPVAI 177

Query: 61  SL 62
           S+
Sbjct: 178 SV 179



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,456,609
Number of extensions: 29140
Number of successful extensions: 92
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 4
Length of query: 64
Length of database: 17,035,801
Length adjustment: 36
Effective length of query: 28
Effective length of database: 15,156,097
Effective search space: 424370716
Effective search space used: 424370716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)