Os06g0168700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Prolin rich protein.
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Os06g0168700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Prolin rich protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.38 | 0.302 | 2.94 | 0.0163 | 0.0675 | -0.408 | 0.131 | 1.44 | 0.0221 | 12.3 | 0.3522 | 2997 | -- | -- |
| 42.52 | 0.304 | 2.92 | -0.00288 | 0.0813 | -0.252 | 0.0981 | -- | 0.0172 | 12.2 | 0.4995 | 3473 | -- | -- |
| 41.44 | 0.3 | 2.95 | 0.00565 | 0.0689 | -0.404 | -- | 1.49 | 0.0205 | 13 | 0.9188 | 2996 | -- | -- |
| 42.52 | 0.304 | 2.92 | 0.0084 | 0.0854 | -0.233 | -- | -- | 0.0241 | 12.6 | 0.4928 | 4511 | -- | -- |
| 41.73 | 0.301 | 2.95 | 0.0012 | -- | -0.427 | -- | 1.59 | 0.0206 | -- | 0.9437 | 2998 | -- | -- |
| 43.16 | 0.308 | 2.93 | 0.044 | 0.0876 | -- | 0.0533 | -- | 0.00201 | 12.7 | -- | -- | -- | -- |
| 43.17 | 0.308 | 2.92 | 0.046 | 0.0877 | -- | -- | -- | 0.00236 | 12.9 | -- | -- | -- | -- |
| 42.98 | 0.305 | 2.92 | 0.00434 | -- | -0.23 | -- | -- | 0.0229 | -- | 0.3935 | 5033 | -- | -- |
| 42.51 | 0.304 | 2.92 | -- | 0.0865 | -0.237 | -- | -- | 0.0228 | 12.9 | 0.4735 | 4511 | -- | -- |
| 43.65 | 0.309 | 2.93 | 0.0428 | -- | -- | -- | -- | 0.000718 | -- | -- | -- | -- | -- |
| 43.22 | 0.308 | 2.93 | -- | 0.0869 | -- | -- | -- | -0.00276 | 12.9 | -- | -- | -- | -- |
| 42.98 | 0.305 | 2.92 | -- | -- | -0.231 | -- | -- | 0.0226 | -- | 0.3966 | 5033 | -- | -- |
| 43.69 | 0.309 | 2.93 | -- | -- | -- | -- | -- | -0.00403 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.17 | humidity | 60 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 7 | 39.92 | humidity | 60 | 90 | < th | dose independent | rect. | 12 | 4 |
| 8 | 39.94 | wind | 1 | 90 | < th | dose independent | rect. | 10 | 6 |
| 17 | 40.21 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 27 | 40.31 | radiation | 40 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 113 | 40.59 | radiation | 20 | 10 | > th | dose independent | rect. | 15 | 1 |
| 276 | 40.65 | wind | 3 | 90 | < th | dose dependent | rect. | 10 | 6 |
| 367 | 40.81 | wind | 1 | 90 | < th | dose independent | rect. | 10 | 1 |
| 373 | 40.83 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 443 | 40.98 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 1 |
| 648 | 41.11 | wind | 1 | 90 | < th | dose independent | rect. | 15 | 1 |
| 684 | 41.14 | wind | 3 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 690 | 41.17 | wind | 3 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 727 | 41.19 | temperature | 30 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 781 | 41.22 | humidity | 60 | 10 | < th | dose dependent | sin | 13 | NA |
| 789 | 41.24 | humidity | 60 | 10 | < th | dose independent | sin | 13 | NA |
| 869 | 41.30 | humidity | 60 | 10 | > th | dose independent | sin | 12 | NA |
| 890 | 41.32 | wind | 3 | 10 | < th | dose independent | rect. | 16 | 1 |
| 948 | 41.37 | humidity | 60 | 90 | > th | dose independent | sin | 13 | NA |
| 975 | 41.39 | temperature | 30 | 30 | > th | dose independent | rect. | 13 | 1 |