BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0544600 Os10g0544600|AK119332
(233 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0544600 Fibrillarin family protein 379 e-106
Os06g0717600 Zinc finger, RING-type domain containing protein 182 2e-46
Os07g0479100 Zinc finger, RING-type domain containing protein 178 4e-45
Os08g0550400 Similar to RING-H2 finger protein ATL5P 164 4e-41
Os02g0743700 Similar to RING-H2 finger protein ATL1Q 125 3e-29
Os06g0231600 Zinc finger, RING-type domain containing protein 108 3e-24
Os09g0542600 Similar to RING-H2 finger protein ATL1I 97 1e-20
Os02g0692000 Similar to RING finger family protein 73 2e-13
Os06g0540400 Zinc finger, RING-type domain containing protein 71 7e-13
Os04g0450400 Zinc finger, RING-type domain containing protein 71 7e-13
Os02g0248280 70 9e-13
Os06g0539800 70 1e-12
Os06g0537300 70 1e-12
Os06g0536100 70 1e-12
Os06g0535200 Zinc finger, RING-type domain containing protein 70 1e-12
Os02g0249200 70 2e-12
Os06g0534900 Zinc finger, RING-type domain containing protein 69 2e-12
Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-... 69 3e-12
Os02g0686100 Similar to RING-H2 finger protein ATL1B 69 3e-12
Os05g0478000 Zinc finger, RING-type domain containing protein 69 4e-12
Os02g0820200 Zinc finger, RING-type domain containing protein 68 5e-12
Os06g0536600 68 5e-12
Os02g0759400 Zinc finger, RING-type domain containing protein 67 1e-11
AK064102 67 1e-11
Os06g0540200 67 1e-11
AK109940 66 2e-11
Os02g0572350 Zinc finger, RING-type domain containing protein 66 2e-11
Os02g0248900 65 4e-11
Os02g0767600 65 4e-11
Os06g0187300 65 5e-11
Os03g0149800 Similar to RING-H2 finger protein ATL1D 65 5e-11
Os02g0790600 Similar to RING-H2 finger protein ATL1R (RING-... 65 5e-11
Os02g0247900 65 6e-11
Os08g0445000 Similar to RING-H2 finger protein ATL5A 64 7e-11
Os01g0213400 Zinc finger, RING-type domain containing protein 64 7e-11
Os12g0432600 Zinc finger, RING-type domain containing protein 64 7e-11
Os03g0391100 64 9e-11
>Os10g0544600 Fibrillarin family protein
Length = 233
Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/233 (82%), Positives = 193/233 (82%)
Query: 1 MDAXXXXXXXXXVAPEVVQWAGGADGFGSAAIGFACRVLCAVATCVFXXXXXXXXXXXXX 60
MDA VAPEVVQWAGGADGFGSAAIGFACRVLCAVATCVF
Sbjct: 1 MDASPSSSSSSPVAPEVVQWAGGADGFGSAAIGFACRVLCAVATCVFAAVGSVVGAVTGS 60
Query: 61 XXXLATESGMLRGAGIGAISGAVFSIEVAESSRDLWHSSDSAVWCLVYMVDIISSLLSGR 120
LATESGMLRGAGIGAISGAVFSIEVAESSRDLWHSSDSAVWCLVYMVDIISSLLSGR
Sbjct: 61 AIGLATESGMLRGAGIGAISGAVFSIEVAESSRDLWHSSDSAVWCLVYMVDIISSLLSGR 120
Query: 121 LVREKVGPXXXXXXXXXXXXXXXPFAETSDLFETGGTKGLPADTLRRLPAIKITGDNAVD 180
LVREKVGP PFAETSDLFETGGTKGLPADTLRRLPAIKITGDNAVD
Sbjct: 121 LVREKVGPAVQSAVQSQISAISSPFAETSDLFETGGTKGLPADTLRRLPAIKITGDNAVD 180
Query: 181 SAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
SAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI
Sbjct: 181 SAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
>Os06g0717600 Zinc finger, RING-type domain containing protein
Length = 232
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 121/198 (61%), Gaps = 1/198 (0%)
Query: 37 RVLCAVATCVFXXXXXXXXXXXXXXXXLATESGMLRGAGIGAISGAVFSIEVAESSRDLW 96
RV V T +F LATESG+ RG GIGAI+GA+ SIEV +SS +W
Sbjct: 35 RVFRGVITFIFAIAGLFLGAVTGGLIGLATESGLFRGTGIGAITGALVSIEVVDSSIRVW 94
Query: 97 HSSDSAVWCLVYMVDIISSLLSGRLVREKVGPXXXXXXXXXXXXX-XXPFAETSDLFETG 155
S S + + Y++++I SLL+GRLVREKV P PF E+ DLFE
Sbjct: 95 RSRRSGISSICYVLNVIYSLLTGRLVREKVDPAVQRVVRSQMNAVDSSPFRESPDLFEIE 154
Query: 156 GTKGLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPC 215
GT G+P ++ +LP ++IT + ++ G+ CSVCLQDF+ GE R LP C HVFHVPC
Sbjct: 155 GTNGMPRASIDKLPEVRITEEYRRNAIGDLSGCSVCLQDFQTGEKVRSLPDCWHVFHVPC 214
Query: 216 IDCWLVRHGSCPLCRRDI 233
ID WL++HGSCPLCRR +
Sbjct: 215 IDGWLIKHGSCPLCRRKL 232
>Os07g0479100 Zinc finger, RING-type domain containing protein
Length = 249
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/192 (45%), Positives = 113/192 (58%), Gaps = 1/192 (0%)
Query: 39 LCAVATCVFXXXXXXXXXXXXXXXXLATESGMLRGAGIGAISGAVFSIEVAESSRDLWHS 98
+CA+ TCVF ++TESGMLRGAG+G +SGAVFSIE ES ++W S
Sbjct: 49 VCALLTCVFAVVGSLVGVFIGAFMGMSTESGMLRGAGVGVVSGAVFSIEAVESCIEIWRS 108
Query: 99 SDSAVWCLVYMVDIISSLLSGRLVREKVGPXXXXXXXXXXXXXXXPFAETSDLFETGGTK 158
S+S + +++++DIISSL SGR+V EKV P PF + +DLFETG T
Sbjct: 109 SESGKYSIIFVLDIISSLFSGRIVWEKVSPALQRAVQSQMSLLSTPFIDNNDLFETGNTG 168
Query: 159 GLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDC 218
G+ D + R+P + D + CC+VCLQDF + R LP C+H FH CID
Sbjct: 169 GMSRDLINRIPKTTFSAATNPDQETDN-CCAVCLQDFGASQFVRVLPHCQHTFHARCIDN 227
Query: 219 WLVRHGSCPLCR 230
WL RH SCPLCR
Sbjct: 228 WLFRHASCPLCR 239
>Os08g0550400 Similar to RING-H2 finger protein ATL5P
Length = 260
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 134/250 (53%), Gaps = 24/250 (9%)
Query: 1 MDAXXXXXXXXXVAPEVVQWAGGADGFGSAAIG-----FACRVLCAVA----TCVFXXXX 51
M+A +P VV AGG D GS++ RV AVA T VF
Sbjct: 1 MEAVAVHASFSSYSPPVV--AGGRDDAGSSSSSRSMSRLPARVAGAVARGIVTFVFATVG 58
Query: 52 XXXXXXXXXXXXLATESGMLRGAGIGAISGAVFSIEVAESSRDLWHSSDSAVWCLVYMVD 111
LATESGM+RG GIGAISGAV ++EV +SS +W S DS +W ++Y++D
Sbjct: 59 TILGAITGGLIGLATESGMVRGTGIGAISGAVVAMEVVDSSVAMWCSHDSGIWSVLYVLD 118
Query: 112 IISSLLSGRLVREKVGPXXXXXXXXXXXXXXXPFAET----SDLFETG------GTKGLP 161
+I SLL+GRLVREKV P PF E+ +++F+TG G+P
Sbjct: 119 VIWSLLTGRLVREKVDPAVQNAVDSQMNAADAPFRESAPTLAEMFDTGIPGVAAAATGMP 178
Query: 162 ADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLV 221
AD + LP +T A + CSVCLQD GE ARRLP C H FH+ CID WL+
Sbjct: 179 ADAIAALP---VTTFAAAAGGDDRAGCSVCLQDLEDGERARRLPECGHTFHLRCIDSWLL 235
Query: 222 RHGSCPLCRR 231
RH SCPLCRR
Sbjct: 236 RHASCPLCRR 245
>Os02g0743700 Similar to RING-H2 finger protein ATL1Q
Length = 220
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 97/167 (58%), Gaps = 1/167 (0%)
Query: 65 ATESGMLRGAGIGAISGAVFSIEVAESSRDLWHSSDSAVWCLVYMVDIISSLLSGRLVRE 124
A++SG+LRGAG+GA +GAV SIEV E+SR W S M D I LL R V+E
Sbjct: 53 ASDSGVLRGAGLGAFAGAVLSIEVLEASRAYWCSDRLGSHGTSSMADFIEQLLQARFVQE 112
Query: 125 KVGPXXXXXXXXXXXXXXXPFAETSDLFETGGTKGLPADTLRRLPAIKITGDNAVDSAGE 184
++ P + D+F +KGL ++L +LP +T D +S GE
Sbjct: 113 QIVPSGYATHRWQVSISDFGHDDLYDIFGDCSSKGLSRESLNKLPHYVVT-DQTRNSFGE 171
Query: 185 PICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRR 231
+ C++CLQD GE ARRLP+C H FH PC+D WLV HGSCP+CR+
Sbjct: 172 DLSCTICLQDIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQ 218
>Os06g0231600 Zinc finger, RING-type domain containing protein
Length = 222
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 85/165 (51%), Gaps = 2/165 (1%)
Query: 65 ATESGMLRGAGIGAISGAVFSIEVAESSRDLWHSSDSAVWCLVYMVDIISSLLSGRLVRE 124
A++ G+LRGAG+G +GAV SIE+ E+SR W S+ + M D + L+ R V+E
Sbjct: 58 ASDGGVLRGAGLGTFAGAVLSIEILEASRAYWCQDRSSSPGSLSMGDFVKQLIHARFVQE 117
Query: 125 KVGPXXXXXXXXXXXXXXXPFAETSDLF-ETGGTKGLPADTLRRLPAIKITGDNAVDSAG 183
+ ++ + +GL +L +LP + D+ S G
Sbjct: 118 QNEASGHITYRWQVGIADVVNGAVHEILGDVPSGEGLSKYSLMKLP-YHVVIDHNNGSIG 176
Query: 184 EPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPL 228
E + C VCLQD G+ RRLP C H FH PC+D WLV HGSCP+
Sbjct: 177 ESLSCPVCLQDVVAGQTVRRLPKCSHTFHQPCVDKWLVGHGSCPM 221
>Os09g0542600 Similar to RING-H2 finger protein ATL1I
Length = 217
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 103/204 (50%), Gaps = 18/204 (8%)
Query: 42 VATCVFXXXXXXXXXXXXXXXXLA---TESGMLRGAGIGAISGAVFSIEVAESSRDLWHS 98
+ATCVF +A +E G+L+G IGAISGA ++EV +S +W
Sbjct: 19 LATCVFATGVQAGMMLGAIAGVIAGFVSEDGLLQGTLIGAISGAFIAMEVVDSLAKIWCY 78
Query: 99 SDSAVWCLVY-MVDIISSLLSGRL-VREKVGPXXXXXXXXXXXXXXXPF--AETS-DLFE 153
+ ++ + M+ + +L+ RL VR V P AE S DL
Sbjct: 79 EEYSIATRAHLMLLVFWNLVIDRLTVRTSVFPTLTTVLDSQLNAVPSRHRRAEVSGDL-- 136
Query: 154 TGGTK----GLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRH 209
TG + G+ + +LP IK+T D+ G C +CL DF+ GE+ARRLP+C H
Sbjct: 137 TGRSYPVVMGMRLAAVDQLPVIKLTAAQT-DATGA---CPICLHDFKAGEIARRLPACCH 192
Query: 210 VFHVPCIDCWLVRHGSCPLCRRDI 233
+FH+ CID WL+ H CP+CRR +
Sbjct: 193 IFHLGCIDNWLLWHALCPMCRRPV 216
>Os02g0692000 Similar to RING finger family protein
Length = 389
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 175 GDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
GD VDS CSVCL +FR GE R LP C H FHVPCID WL H +CPLCR +I
Sbjct: 155 GDGFVDSTD----CSVCLGEFREGESLRLLPKCSHAFHVPCIDTWLKSHSNCPLCRCNI 209
>Os06g0540400 Zinc finger, RING-type domain containing protein
Length = 168
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 167 RLPAIKITGDNAVDSAGEPIC-CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGS 225
++P TG S GE CSVCL R GEM RRLP+C+H++HV CID WL H +
Sbjct: 85 KIPEFAYTGSA---SGGEGAAQCSVCLGAVRGGEMVRRLPACKHLYHVECIDMWLASHAT 141
Query: 226 CPLCRRDI 233
CPLCR ++
Sbjct: 142 CPLCRTEV 149
>Os04g0450400 Zinc finger, RING-type domain containing protein
Length = 415
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 34/46 (73%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
CSVCL +F+ GE+ R LP C H FHVPCID WL H +CPLCR D+
Sbjct: 202 CSVCLGEFQDGELVRLLPKCGHAFHVPCIDTWLRAHVNCPLCRSDV 247
>Os02g0248280
Length = 189
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
CSVCL+D + GEM R+LP+CRH+FHV CID WL H +CPLCR ++
Sbjct: 111 CSVCLEDVQAGEMVRQLPACRHLFHVGCIDMWLHSHSTCPLCRCNV 156
>Os06g0539800
Length = 167
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 162 ADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLV 221
AD ++P G GE CSVCL + GE RRLP+C+H++HV CID WL
Sbjct: 72 ADVAAKIPEFAYAGSARHGGGGE---CSVCLGAVQGGEAVRRLPACKHLYHVECIDMWLA 128
Query: 222 RHGSCPLCRRDI 233
H +CPLCR ++
Sbjct: 129 SHATCPLCRTEV 140
>Os06g0537300
Length = 174
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 162 ADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLV 221
AD ++P G GE CSVCL + GE RRLP+C+H++HV CID WL
Sbjct: 79 ADVAAKIPEFAYAGSARHGGGGE---CSVCLGAVQGGEAVRRLPACKHLYHVECIDMWLA 135
Query: 222 RHGSCPLCRRDI 233
H +CP+CR ++
Sbjct: 136 SHATCPICRTEV 147
>Os06g0536100
Length = 190
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 153 ETGGTKGLPADTLRRLPAIKITGDN---AVDSAGEPICCSVCLQDFRVGEMARRLPSCRH 209
E+GG + P + L A + + A ++G C+VCL R GEM RRLP+C H
Sbjct: 81 ESGGGEPFPVEALPPAYAYVVGSSDDGGATAASGVGRECAVCLGAVREGEMVRRLPACEH 140
Query: 210 VFHVPCIDCWLVRHGSCPLCRRDI 233
V+H CID WL H +CPLCRR++
Sbjct: 141 VYHADCIDRWLAAHRTCPLCRREL 164
>Os06g0535200 Zinc finger, RING-type domain containing protein
Length = 223
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 42/75 (56%)
Query: 159 GLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDC 218
G+ +TL +PA C+VCL+ R GE ARRLPSC H FHV CID
Sbjct: 127 GVSGETLASIPAFAYDASAHGGGGEAAAQCAVCLEALRGGETARRLPSCAHTFHVACIDM 186
Query: 219 WLVRHGSCPLCRRDI 233
WL H +CP+CRR +
Sbjct: 187 WLGSHATCPVCRRRV 201
>Os02g0249200
Length = 166
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
C++CL R GE RRLP C+H+FHV C+D WL H +CPLCRRD+
Sbjct: 110 CAICLGVVRDGEAVRRLPECKHLFHVECVDMWLYSHATCPLCRRDV 155
>Os06g0534900 Zinc finger, RING-type domain containing protein
Length = 412
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 35/46 (76%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
C+VCL+D GE RRLPSC H+FHV CID WL H +CPLCRRD+
Sbjct: 148 CAVCLEDVVAGETVRRLPSCGHLFHVDCIDMWLHAHRTCPLCRRDL 193
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 186 ICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRR 231
+ C+VCL+D R GEM RRLP+C H+FH C+D WL +CPLCRR
Sbjct: 345 VLCAVCLEDLRGGEMVRRLPACGHLFHEDCVDVWLRVRRTCPLCRR 390
>Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 321
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 158 KGLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCID 217
+GLPA LR LP + + A E + C+VCL + GE R LP C H FHV CID
Sbjct: 83 RGLPAAALRALP-VTVYAKPAAARGEEALECAVCLSEVADGEKVRMLPKCDHGFHVECID 141
Query: 218 CWLVRHGSCPLCRRDI 233
W H +CPLCR +
Sbjct: 142 MWFHSHDTCPLCRAPV 157
>Os02g0686100 Similar to RING-H2 finger protein ATL1B
Length = 189
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 157 TKGLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCI 216
KG+ + LR LP + D A E C++CL +F G+ R LP C H FH CI
Sbjct: 72 NKGVKKEVLRSLPTVTYVSDGGGGEAEE---CAICLVEFEDGQAVRVLPQCDHRFHAACI 128
Query: 217 DCWLVRHGSCPLCRR 231
D WL H SCP CRR
Sbjct: 129 DTWLRAHSSCPSCRR 143
>Os05g0478000 Zinc finger, RING-type domain containing protein
Length = 189
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 35/54 (64%)
Query: 180 DSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
+ E C++CL +F GE R LP CRH FHV C+D WLV HGSCP CRR +
Sbjct: 116 EETAETDVCAICLGEFADGEKVRVLPRCRHGFHVRCVDAWLVSHGSCPTCRRQV 169
>Os02g0820200 Zinc finger, RING-type domain containing protein
Length = 320
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 146 AETSDLFETGGTKGLPADTLRRLPAI---KITGDNAVDSAGEPICCSVCLQDFRVGEMAR 202
A +S L +GL ++ LPA K D DS+ C+VC+ +F+ E R
Sbjct: 101 AASSSLPAVAEPRGLEEAAIQSLPAFRYRKAIKDTTADSSE----CAVCISEFQEEERVR 156
Query: 203 RLPSCRHVFHVPCIDCWLVRHGSCPLCR 230
LPSC HVFHV CID WL + +CPLCR
Sbjct: 157 LLPSCLHVFHVDCIDTWLQGNANCPLCR 184
>Os06g0536600
Length = 239
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
C+VCL R GEM RRLP+C HV+H CID WL H +CPLCRR++
Sbjct: 182 CAVCLGAVREGEMVRRLPACEHVYHADCIDRWLAAHRTCPLCRREL 227
>Os02g0759400 Zinc finger, RING-type domain containing protein
Length = 437
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 158 KGLPADTLRRLPAIKITGDNAV---DSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVP 214
+GL + +R P +K A+ AG + C+VCL +F EM R LP C H FH
Sbjct: 117 RGLDSSVVRMFPTMKYAEAKALRVGKVAGAALECAVCLSEFEDDEMLRFLPKCSHAFHPD 176
Query: 215 CIDCWLVRHGSCPLCRRDI 233
CI WL H +CP+CRR++
Sbjct: 177 CIGQWLASHVTCPVCRRNL 195
>AK064102
Length = 357
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
C+VCL +FR GE+ R LP C H FH PCID WL H +CPLCR +
Sbjct: 157 CAVCLGEFRDGELVRLLPRCSHPFHAPCIDTWLRAHVNCPLCRSPV 202
>Os06g0540200
Length = 127
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
C+VCL R GEM RRLP+C HV+H CID WL H +CPLCRR++
Sbjct: 70 CAVCLGAVREGEMVRRLPACEHVYHADCIDRWLAAHRTCPLCRREL 115
>AK109940
Length = 373
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 31/43 (72%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCR 230
C VCL +FR GE+ R LP C H FHVPCID WL H +CPLCR
Sbjct: 157 CPVCLGEFRDGELLRLLPKCGHAFHVPCIDAWLRAHVNCPLCR 199
>Os02g0572350 Zinc finger, RING-type domain containing protein
Length = 325
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 31/43 (72%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCR 230
C VCL +FR GE+ R LP C H FHVPCID WL H +CPLCR
Sbjct: 109 CPVCLGEFRDGELLRLLPKCGHAFHVPCIDAWLRAHVNCPLCR 151
>Os02g0248900
Length = 195
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 159 GLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDC 218
GL A + LPA + + G+P C SVCL+D R GE R LP+C H++H CID
Sbjct: 95 GLTAAAIDALPASEY--ERPRGGGGDPAC-SVCLEDVRGGETVRWLPACGHLYHAACIDA 151
Query: 219 WLVRHGSCPLCRRDI 233
WL +CPLCR D+
Sbjct: 152 WLRSRTTCPLCRSDL 166
>Os02g0767600
Length = 335
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 156 GTKGLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPC 215
G P+ + LP ++ITG + D + C VC +DF +GE AR++P C+HV+H C
Sbjct: 171 GPAPAPSSAIDSLPTVQITGAHLSDGSQ----CPVCKEDFELGEAARQMP-CKHVYHSDC 225
Query: 216 IDCWLVRHGSCPLCRRDI 233
I WL H SCP+CR +
Sbjct: 226 IVPWLRLHNSCPVCRYQL 243
>Os06g0187300
Length = 444
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 184 EPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCR 230
+P C+VCL +F + R LP+C H FHVPCID WL+ H +CP+CR
Sbjct: 119 DPFDCAVCLCEFAGDDKLRLLPTCGHAFHVPCIDAWLLSHSTCPICR 165
>Os03g0149800 Similar to RING-H2 finger protein ATL1D
Length = 300
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 153 ETGGTKGLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFH 212
E GG GL D + LP +K + SA P C+VCL +F E + LPSC H FH
Sbjct: 90 EVGG--GLDPDVVAALPVVKYRRAASGKSA-SPQECAVCLSEFVRDERLKLLPSCSHAFH 146
Query: 213 VPCIDCWLVRHGSCPLCR 230
+ CID WL + SCPLCR
Sbjct: 147 IDCIDTWLHHNVSCPLCR 164
>Os02g0790600 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 428
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 184 EPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
+P C+VCL +F + R LP C H FH+ CID WL+ H +CPLCRR +
Sbjct: 119 DPFDCAVCLCEFAADDQLRLLPKCSHAFHLECIDTWLLSHSTCPLCRRSL 168
>Os02g0247900
Length = 209
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
CSVCL + R GE A+RLP C HVFH CID WL H +CP+CR +
Sbjct: 144 CSVCLGEMRQGEAAKRLPVCLHVFHEECIDMWLGSHATCPICRSPV 189
>Os08g0445000 Similar to RING-H2 finger protein ATL5A
Length = 501
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 184 EPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI 233
+P C+VCL +F + R LP C H FHV CID WL+ H +CPLCRR +
Sbjct: 149 DPFDCAVCLCEFADDDRLRLLPKCSHAFHVDCIDTWLLSHSTCPLCRRSL 198
>Os01g0213400 Zinc finger, RING-type domain containing protein
Length = 237
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 188 CSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRD 232
C+VCL + GE R LP+CRHVFHV C+D WL +CPLCR +
Sbjct: 129 CAVCLSELADGEKVRELPNCRHVFHVECVDAWLRSRTTCPLCRAE 173
>Os12g0432600 Zinc finger, RING-type domain containing protein
Length = 185
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 158 KGLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCID 217
+GL + + +PA + ++ + C+VC+ + G+ RRLP+C H FH PC+D
Sbjct: 96 RGLSQEDIEAIPAFEYRRGSSGSGVAQ---CAVCIAAVKDGDTVRRLPACGHAFHAPCVD 152
Query: 218 CWLVRHGSCPLCRRDI 233
WL H +CP+CR D+
Sbjct: 153 GWLRDHATCPMCRADV 168
>Os03g0391100
Length = 417
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 156 GTKGLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVG-EMARRLPSCRHVFHVP 214
G GL + LP + AV + + C+VCL +F G E R LP C HVFH
Sbjct: 120 GRAGLDVAAMEALPVLTYATARAVKAGRGALECAVCLAEFADGGEKLRLLPGCCHVFHAA 179
Query: 215 CIDCWLVRHGSCPLCRRDI 233
CID WL H +CP+CR D+
Sbjct: 180 CIDVWLAAHVTCPVCRADL 198
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,096,469
Number of extensions: 250567
Number of successful extensions: 1125
Number of sequences better than 1.0e-10: 80
Number of HSP's gapped: 1157
Number of HSP's successfully gapped: 81
Length of query: 233
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 135
Effective length of database: 11,918,829
Effective search space: 1609041915
Effective search space used: 1609041915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)