BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0281700 Os09g0281700|AK068988
(162 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0281700 Similar to Ras-related protein RGP1 (GTP-bindi... 259 4e-70
Os10g0377400 Similar to Ras-related protein Rab11D 139 9e-34
Os01g0848700 Similar to Ras-related protein Rab11C 120 4e-28
Os05g0564400 Similar to GTP-binding protein 115 1e-26
Os06g0551400 Ras-related protein RIC2 113 7e-26
AF327517 113 7e-26
Os09g0327100 Similar to GTP-binding protein 112 2e-25
Os03g0823700 Similar to Ras-related protein Rab11C 109 9e-25
Os01g0750000 Similar to Ras-related protein RIC2 109 1e-24
Os05g0516800 Similar to Ras-related protein RIC2 104 3e-23
Os03g0843100 Ras GTPase family protein 103 4e-23
AK060246 103 7e-23
Os01g0667600 Similar to GTP-binding protein 100 5e-22
Os05g0105100 Similar to Small GTPase rab11-related 99 9e-22
Os05g0280200 Similar to Ras-related protein Rab11A 93 9e-20
Os07g0634200 Similar to Rab GTP-binding protein Rab11a 86 1e-17
Os08g0525000 Ras GTPase family protein 84 6e-17
Os09g0527600 Similar to GTP-binding protein (Fragment) 77 5e-15
Os06g0714600 Ras GTPase family protein 74 7e-14
Os04g0470100 Similar to Small GTP binding protein Rab2 65 2e-11
>Os09g0281700 Similar to Ras-related protein RGP1 (GTP-binding regulatory protein
RGP1)
Length = 162
Score = 259 bits (663), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 131/162 (80%), Positives = 131/162 (80%)
Query: 1 KEKRRRWGKDVXXXXXXXXXXXXXXXXVQGGADXXXXXXXXXXXXXXXPQRLRGHADKNI 60
KEKRRRWGKDV VQGGAD PQRLRGHADKNI
Sbjct: 1 KEKRRRWGKDVARRRELRGGGAEDRLRVQGGADRRLRGGEVAAAGAVRPQRLRGHADKNI 60
Query: 61 VIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVS 120
VIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVS
Sbjct: 61 VIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVS 120
Query: 121 KKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 162
KKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS
Sbjct: 121 KKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 162
>Os10g0377400 Similar to Ras-related protein Rab11D
Length = 216
Score = 139 bits (350), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 87/113 (76%), Gaps = 3/113 (2%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ LRGHADKNIVIML+GNKSDL R V TEDAKEFAE+ENLFF+ETSAL++TNVENAF
Sbjct: 106 EELRGHADKNIVIMLVGNKSDLEDERAVSTEDAKEFAEKENLFFLETSALQATNVENAFQ 165
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 162
TVL+EI++I SKKN+ A+ + + + S L G K+VVPG P K+ CC S
Sbjct: 166 TVLSEIFKIHSKKNMAADPKANGAAPS--LAGKKVVVPGPAQEIP-KSKCCSS 215
>Os01g0848700 Similar to Ras-related protein Rab11C
Length = 216
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 52 LRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTV 111
LR HAD NIV+M++GNKSDL LR VP ED F+E+E L F+ETSALE+ NVE AF TV
Sbjct: 110 LRDHADANIVVMMVGNKSDLNHLRSVPEEDGHAFSEKEGLSFLETSALEAINVEKAFHTV 169
Query: 112 LTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 162
L+EI++IVSKK L A E ++G S ++GT I V E TK SCC S
Sbjct: 170 LSEIHQIVSKKALAAQESASTNGRS--MQGTTINVA--EAPAATKGSCCSS 216
>Os05g0564400 Similar to GTP-binding protein
Length = 217
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 75/113 (66%), Gaps = 5/113 (4%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ L+ H D NIVIML+GNK+DL LR V TEDAK FAE+EN FFMETSALES NVENAF
Sbjct: 108 RELKDHTDANIVIMLVGNKADLRHLRAVSTEDAKAFAEKENTFFMETSALESMNVENAFT 167
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 162
VLT+IY +VSKK L ++ ++ KG I V G++ K S C S
Sbjct: 168 EVLTQIYHVVSKKALDIGDD-----PAAPPKGQTINVGGKDDVSAVKKSACCS 215
>Os06g0551400 Ras-related protein RIC2
Length = 217
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 76/111 (68%), Gaps = 5/111 (4%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ LR H D NIV+ML+GNKSDL L V T++ K FAERE+L+FMETSALESTNVENAF
Sbjct: 110 KELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFA 169
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCC 160
VLT+IYRIVSK+++ A ++ S KG KI + + + K CC
Sbjct: 170 EVLTQIYRIVSKRSVEAGDDAGSGPG----KGEKINIK-DDVSAVKKGGCC 215
>AF327517
Length = 217
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 76/111 (68%), Gaps = 5/111 (4%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ LR H D NIV+ML+GNKSDL L V T++ K FAERE+L+FMETSALESTNVENAF
Sbjct: 110 KELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFA 169
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCC 160
VLT+IYRIVSK+++ A ++ S KG KI + + + K CC
Sbjct: 170 EVLTQIYRIVSKRSVEAGDDAGSGPG----KGEKINIK-DDVSAVKKGGCC 215
>Os09g0327100 Similar to GTP-binding protein
Length = 216
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 76/114 (66%), Gaps = 6/114 (5%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ LR H D NIVIML+GNK+DL LR V EDAK FAERE+ FFMETSALES NVE+AF
Sbjct: 108 KELRDHTDANIVIMLVGNKADLRHLRAVSVEDAKGFAERESTFFMETSALESMNVESAFT 167
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKAS-CCMS 162
VLT+IYR+VSKK L ++ ++ +G I V G++ K S CC S
Sbjct: 168 EVLTQIYRVVSKKALDIGDD-----PAAPPRGQTINVGGKDDVSAVKKSGCCSS 216
>Os03g0823700 Similar to Ras-related protein Rab11C
Length = 215
Score = 109 bits (273), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 75/111 (67%), Gaps = 5/111 (4%)
Query: 52 LRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTV 111
LR HAD NIVIM++GNKSDL LR VP ED + AE+E L F+ETSALE+ NVE AF T+
Sbjct: 110 LRDHADSNIVIMMVGNKSDLNHLRSVPEEDGQALAEKEGLSFLETSALEALNVEKAFQTI 169
Query: 112 LTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 162
L +I++I+SKK L A E ++G+ +GT I V + A TK CC S
Sbjct: 170 LKDIHQIISKKALAAQE---AAGSGPPTQGTTINVT--DSAVNTKRGCCSS 215
>Os01g0750000 Similar to Ras-related protein RIC2
Length = 221
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 79/111 (71%), Gaps = 5/111 (4%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ LR H D +IV+ML+GNKSDL L V TED KE+AE E+L+FMETSAL++TNVENAF
Sbjct: 114 KELRDHTDPSIVVMLVGNKSDLRHLVAVSTEDGKEYAEAESLYFMETSALDATNVENAFA 173
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCC 160
VLT+IY+ VSKK + A+++ G+++ +KG KI V + + + CC
Sbjct: 174 EVLTQIYQTVSKKTVEASDD----GSNAPIKGEKINVK-DDVSALKRIGCC 219
>Os05g0516800 Similar to Ras-related protein RIC2
Length = 220
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 5/111 (4%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ LR H D +IV MLIGNKSDL L V TED KEFAE E+++FMETSAL++TNV+NAF
Sbjct: 113 RELRDHTDPSIVCMLIGNKSDLRHLVAVSTEDGKEFAEAESMYFMETSALDATNVDNAFA 172
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCC 160
VLT+IY+IV+KK + A E+ G++ KG KI V + + + CC
Sbjct: 173 EVLTQIYQIVNKKPVEAPED----GSAGPGKGEKINVK-DDVSAMKRVGCC 218
>Os03g0843100 Ras GTPase family protein
Length = 223
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ LR HAD NIV+MLIGNK DL LR V EDA FAERE L F+ETSAL++TNV+ AF
Sbjct: 114 KELRDHADSNIVVMLIGNKIDLKHLRSVSLEDATSFAEREGLSFVETSALDATNVDKAFQ 173
Query: 110 TVLTEIYRIVSKK 122
TVLTEIYRI+SKK
Sbjct: 174 TVLTEIYRIISKK 186
>AK060246
Length = 220
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 76/111 (68%), Gaps = 5/111 (4%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ LR H D +IV MLIGNKSDL L V TED KEFAE E+++FMETSAL++TNV+NAF
Sbjct: 113 RELRDHTDPSIVCMLIGNKSDLRHLVAVSTEDGKEFAEAESMYFMETSALDATNVDNAFA 172
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCC 160
VLT++Y+IV+KK + A E+ G++ KG KI V + + + CC
Sbjct: 173 EVLTQMYQIVNKKPVEAPED----GSAGPGKGEKINVK-DDVSAMKRVGCC 218
>Os01g0667600 Similar to GTP-binding protein
Length = 224
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 71/115 (61%), Gaps = 7/115 (6%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ LR H D NIV+ML+GNK+DL LR VP EDA+ FAE F METSALE+TNVE AF
Sbjct: 115 KELRDHTDANIVVMLVGNKADLRHLRAVPAEDARAFAEAHGTFSMETSALEATNVEGAFT 174
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPA--PPTKASCCMS 162
VL +IYR+VS+ L ++ ++ +G I V ++ A P + CC S
Sbjct: 175 EVLAQIYRVVSRNALDIGDD-----PAAPPRGRTIDVSAKDDAVTPVNSSGCCSS 224
>Os05g0105100 Similar to Small GTPase rab11-related
Length = 220
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
+ LR HAD NI IML+GNK+DL LR V T+DA +FAE E L ++ETSALE+TNVE AF
Sbjct: 110 KELRDHADANIRIMLVGNKTDLKHLRAVATDDAHKFAEAEGLSYIETSALEATNVEEAFQ 169
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCC 160
+L +IYR +SKK VA++E + + +G I V + A K CC
Sbjct: 170 LILGDIYRAISKKP-VASDEGGAGAAGGVKEGKTINVAAGD-ANSEKKQCC 218
>Os05g0280200 Similar to Ras-related protein Rab11A
Length = 217
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 56/71 (78%)
Query: 52 LRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTV 111
LR HAD +IVIM++GNKSDL LR V ++ K AE+E LFF+ETSA+E+ NVE AF T+
Sbjct: 110 LRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTI 169
Query: 112 LTEIYRIVSKK 122
+TE+Y IV++K
Sbjct: 170 ITEVYGIVNRK 180
>Os07g0634200 Similar to Rab GTP-binding protein Rab11a
Length = 220
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 52 LRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTV 111
L H+D N+V +L+GNK+DL R V T + K AE + LFFMETSAL+S+NV AF TV
Sbjct: 112 LHTHSDMNVVTILVGNKTDLKHAREVSTAEGKALAESQGLFFMETSALDSSNVAEAFQTV 171
Query: 112 LTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 162
+ EIY I+S+K + E+ S SL G +++ CC S
Sbjct: 172 VKEIYGILSRKVFQSQEQKRS--EQSLSNGKPVMLSDSNEPTSGGRWCCSS 220
>Os08g0525000 Ras GTPase family protein
Length = 216
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 50 QRLRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFM 109
Q L H+D + ML+GNK DL +R VP E+ K AE E LFFMETSAL+STNV AF
Sbjct: 109 QELNTHSDTTVAKMLVGNKCDLDNIREVPVEEGKALAEAEGLFFMETSALDSTNVRTAFE 168
Query: 110 TVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPG---QEPAPPTKASCC 160
V+ EIY VS+K L +S + L ++ + G + + CC
Sbjct: 169 IVIKEIYSNVSRKIL------NSDSYKAELSLNRVSIEGDSKDDQKQSNRFGCC 216
>Os09g0527600 Similar to GTP-binding protein (Fragment)
Length = 239
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 50 QRLRGHADKNIVIMLIGNKSDL-GTLRVVPTEDAKEFAERENLFFMETSALESTNVENAF 108
+ LR HAD + V+ LIGNK+D+ R V ++A FAE + LFF E SAL NV+ AF
Sbjct: 118 EELRAHADGSTVVALIGNKADMPAGRREVAADEAARFAEEQGLFFSEASALSGDNVDRAF 177
Query: 109 MTVLTEIYRIVSKKNLVANE-----EVDSSGNSSL-LKGTKIVVPG-QEPAPPTKASCC 160
+T+L EI+ +VS++ L +E + + G L LKGT + V E + K+S C
Sbjct: 178 LTLLEEIFAVVSRRALELDEARRMRDGGAGGGEVLSLKGTTLDVGSIMETSAMKKSSQC 236
>Os06g0714600 Ras GTPase family protein
Length = 225
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 52 LRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTV 111
LR HAD +IV+MLIGNK+DL R V ++A FAE + LFF E SAL NVE AF+ +
Sbjct: 105 LRAHADNSIVVMLIGNKADLSHARAVAADEAAAFAEDQGLFFSEASALSGDNVEEAFLGL 164
Query: 112 LTEIYRIVSKKNLVANEEVDSSGNSS-----LLKGTKIVVPGQEPAPPTKA 157
L EI+ IVS+++L+ + ++ ++ +L+GTK+ + + T A
Sbjct: 165 LREIHAIVSRRSLLEMDGINGDAAANANAALMLRGTKLSLSDELSIMETSA 215
>Os04g0470100 Similar to Small GTP binding protein Rab2
Length = 211
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 53 RGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVL 112
R HA+ N+ IML+GNKSDL R V E+ ++FA+ L FME SA + NVE AF+
Sbjct: 105 RQHANANMTIMLVGNKSDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTA 164
Query: 113 TEIYR 117
IY+
Sbjct: 165 GAIYK 169
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,179,776
Number of extensions: 117050
Number of successful extensions: 276
Number of sequences better than 1.0e-10: 21
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 21
Length of query: 162
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,179,899
Effective search space: 840413031
Effective search space used: 840413031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)