Os09g0281700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ras-related protein RGP1 (GTP-binding regulatory protein RGP1).
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Os09g0281700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ras-related protein RGP1 (GTP-binding regulatory protein RGP1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.04 | 0.262 | 10.4 | -0.198 | 0.187 | 0.64 | -1.21 | 2.06 | -0.025 | 4.89 | 29.66 | 117 | -- | -- |
| 34.95 | 0.275 | 10.4 | 0.163 | 0.195 | 0.758 | -0.761 | -- | 0.0591 | 5.88 | 34.07 | 67 | -- | -- |
| 34.47 | 0.273 | 10.4 | -0.0713 | 0.206 | 0.657 | -- | 1.5 | -0.0118 | 5.09 | 65.18 | 58 | -- | -- |
| 36.29 | 0.281 | 10.4 | 0.138 | 0.214 | 0.683 | -- | -- | 0.0459 | 5.05 | 68.88 | 62 | -- | -- |
| 36.12 | 0.28 | 10.4 | -0.0375 | -- | 0.842 | -- | 1.56 | 0.0155 | -- | 64.63 | 86 | -- | -- |
| 40.44 | 0.298 | 10.4 | -0.00389 | 0.394 | -- | -0.403 | -- | -0.0522 | 4.29 | -- | -- | -- | -- |
| 40.85 | 0.299 | 10.4 | -0.000417 | 0.391 | -- | -- | -- | -0.0501 | 4.01 | -- | -- | -- | -- |
| 38.07 | 0.287 | 10.4 | 0.185 | -- | 0.877 | -- | -- | 0.0774 | -- | 72.69 | 87 | -- | -- |
| 36.74 | 0.282 | 10.4 | -- | 0.232 | 0.615 | -- | -- | 0.0225 | 4.86 | 81.1 | 62 | -- | -- |
| 49.17 | 0.328 | 10.4 | 0.0155 | -- | -- | -- | -- | -0.0397 | -- | -- | -- | -- | -- |
| 40.85 | 0.299 | 10.4 | -- | 0.391 | -- | -- | -- | -0.05 | 4.01 | -- | -- | -- | -- |
| 38.91 | 0.291 | 10.4 | -- | -- | 0.816 | -- | -- | 0.0501 | -- | 81.44 | 87 | -- | -- |
| 49.18 | 0.327 | 10.4 | -- | -- | -- | -- | -- | -0.0414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.12 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 3 | 27.57 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 63 | 30.35 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 67 | 30.42 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 97 | 30.78 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 101 | 30.82 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 103 | 30.82 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 104 | 30.84 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 112 | 30.91 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 118 | 30.97 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 119 | 30.97 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 124 | 30.99 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 127 | 31.01 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 137 | 31.08 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 19 |
| 144 | 31.11 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 147 | 31.13 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 151 | 31.15 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 155 | 31.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 157 | 31.17 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 165 | 31.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 23 |
| 168 | 31.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 172 | 31.22 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 183 | 31.25 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 191 | 31.27 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 196 | 31.28 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 197 | 31.29 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 205 | 31.32 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 222 | 31.36 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 226 | 31.36 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 236 | 31.37 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 238 | 31.38 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 239 | 31.38 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 242 | 31.38 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 249 | 31.40 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 12 | 17 |
| 252 | 31.41 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 260 | 31.42 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 12 | 17 |
| 264 | 31.42 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 266 | 31.43 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 278 | 31.44 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 289 | 31.45 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 293 | 31.45 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 316 | 31.46 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 13 | 14 |
| 319 | 31.46 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 340 | 31.48 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 345 | 31.48 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 366 | 31.50 | temperature | 20.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 367 | 31.50 | temperature | 20.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 385 | 31.50 | temperature | 20.0 | 14400 | < th | dose dependent | sin | 15 | NA |
| 400 | 31.51 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 405 | 31.51 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 487 | 31.56 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 516 | 31.56 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 20 |
| 517 | 31.56 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 20 |
| 524 | 31.56 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 554 | 31.57 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 616 | 31.60 | temperature | 20.0 | 14400 | > th | dose independent | no | NA | NA |
| 618 | 31.60 | temperature | 20.0 | 14400 | < th | dose independent | no | NA | NA |
| 678 | 31.61 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 698 | 31.62 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 728 | 31.63 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 745 | 31.64 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 748 | 31.64 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 23 | 23 |
| 792 | 31.67 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 818 | 31.69 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 840 | 31.70 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 881 | 31.73 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 890 | 31.74 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 896 | 31.74 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 914 | 31.76 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 937 | 31.78 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 952 | 31.80 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 962 | 31.81 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 5 |