BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0633500 Os06g0633500|AK108505
(124 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0633500 Zinc finger, RING-type domain containing protein 186 3e-48
Os02g0727700 Zinc finger, RING-type domain containing protein 101 2e-22
Os08g0487500 Zinc finger, RING-type domain containing protein 92 7e-20
Os02g0191500 Similar to Goliath homolog precursor (RING fin... 91 3e-19
Os10g0487400 Zinc finger, RING-type domain containing protein 91 3e-19
Os12g0118700 Zinc finger, RING-type domain containing protein 88 1e-18
Os11g0119200 Zinc finger, RING-type domain containing protein 87 3e-18
Os05g0110000 Zinc finger, RING-type domain containing protein 76 7e-15
Os06g0101300 Zinc finger, RING-type domain containing protein 75 1e-14
Os01g0972000 Zinc finger, RING-type domain containing protein 71 2e-13
Os08g0464400 Zinc finger, RING-type domain containing protein 70 2e-13
Os09g0242800 Zinc finger, RING-type domain containing protein 69 8e-13
Os03g0351800 Zinc finger, RING-type domain containing protein 69 1e-12
Os01g0276600 Zinc finger, RING-type domain containing protein 68 2e-12
Os09g0243200 Zinc finger, RING-type domain containing protein 67 3e-12
Os05g0488800 Zinc finger, RING-type domain containing protein 67 3e-12
Os12g0140233 Zinc finger, RING-type domain containing protein 66 6e-12
Os02g0767600 66 6e-12
Os12g0140700 Zinc finger, RING-type domain containing protein 66 6e-12
Os03g0324900 Zinc finger, RING-type domain containing protein 66 7e-12
Os09g0434200 Zinc finger, RING-type domain containing protein 65 9e-12
Os05g0495000 64 2e-11
Os03g0812200 Zinc finger, RING-type domain containing protein 64 2e-11
Os03g0271600 Zinc finger, RING-type domain containing protein 64 4e-11
Os01g0802000 Zinc finger, RING-type domain containing protein 63 5e-11
>Os06g0633500 Zinc finger, RING-type domain containing protein
Length = 124
Score = 186 bits (473), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/124 (76%), Positives = 95/124 (76%)
Query: 1 DEDDFEVLPGHVXXXXXXXXXXXXXXXVERLQXXXXXXXXXXXXXXSRGCAVCKDGIAQG 60
DEDDFEVLPGHV VERLQ SRGCAVCKDGIAQG
Sbjct: 1 DEDDFEVLPGHVADAAAGGAPPAARAAVERLQVVAVGGGGEEAAAASRGCAVCKDGIAQG 60
Query: 61 ELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRRSSGDSVAQLGT 120
ELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRRSSGDSVAQLGT
Sbjct: 61 ELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRRSSGDSVAQLGT 120
Query: 121 PMQI 124
PMQI
Sbjct: 121 PMQI 124
>Os02g0727700 Zinc finger, RING-type domain containing protein
Length = 311
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRR 109
CAVCKDG+ GE A +LPCAHLYH CI PWLAIRN+CP+CR+ELPTDDPEYE + +R
Sbjct: 231 CAVCKDGMEAGERARRLPCAHLYHDGCILPWLAIRNTCPLCRHELPTDDPEYENWKARRA 290
Query: 110 SSG 112
++G
Sbjct: 291 AAG 293
>Os08g0487500 Zinc finger, RING-type domain containing protein
Length = 271
Score = 92.4 bits (228), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 48/63 (76%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRR 109
CAVC+DG+A GE +LPC+H YH CI PWL +RNSCP+CR+ELPTDDP+YE + R
Sbjct: 209 CAVCRDGVAAGERVKRLPCSHGYHEECIMPWLDVRNSCPLCRFELPTDDPQYESWKASRA 268
Query: 110 SSG 112
++
Sbjct: 269 AAA 271
>Os02g0191500 Similar to Goliath homolog precursor (RING finger protein 130)
Length = 375
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 51/77 (66%)
Query: 47 SRGCAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRV 106
SRGCAVCKD A G++ LPC H +HG CI PWL IR +CPVCR+++ T+D +YE+R
Sbjct: 272 SRGCAVCKDSFASGQIVALLPCKHYFHGDCIWPWLTIRTTCPVCRHQVRTEDDDYEQRMA 331
Query: 107 KRRSSGDSVAQLGTPMQ 123
+R +V G P Q
Sbjct: 332 RRVIVLAAVEHQGAPAQ 348
>Os10g0487400 Zinc finger, RING-type domain containing protein
Length = 304
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 44/56 (78%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRR 105
CAVCK+ + GE A Q+PC H+YH CI PWL + NSCP+CR+ELPTDDP+YE R+
Sbjct: 170 CAVCKEDFSPGEGAKQMPCKHIYHADCIMPWLDLHNSCPICRFELPTDDPDYEGRK 225
>Os12g0118700 Zinc finger, RING-type domain containing protein
Length = 499
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 42/56 (75%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRR 105
C VCKD I A QLPC HLYH +CI PWL+ RN+CPVCRYELPTDD EYE+ +
Sbjct: 334 CPVCKDPIPTRARAKQLPCMHLYHSSCILPWLSSRNTCPVCRYELPTDDAEYERSK 389
>Os11g0119200 Zinc finger, RING-type domain containing protein
Length = 491
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 41/56 (73%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRR 105
C VCKD I A QLPC HLYH +CI PW + RN+CPVCRYELPTDD EYE+ +
Sbjct: 326 CPVCKDPIPTRARAKQLPCMHLYHSSCILPWFSSRNTCPVCRYELPTDDAEYERSK 381
>Os05g0110000 Zinc finger, RING-type domain containing protein
Length = 333
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTD 97
CAVCK+ G+ A ++PC+H+YH CI PWLA+RNSCPVCR+E+PTD
Sbjct: 143 CAVCKEPFELGDEAREMPCSHIYHQDCILPWLALRNSCPVCRHEMPTD 190
>Os06g0101300 Zinc finger, RING-type domain containing protein
Length = 338
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 37/52 (71%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEY 101
CAVC D G A QLPC H++H CI PWL + +SCPVCR+ELPTDDP +
Sbjct: 202 CAVCMDDFHLGAAAKQLPCKHVFHKDCILPWLDLHSSCPVCRFELPTDDPHH 253
>Os01g0972000 Zinc finger, RING-type domain containing protein
Length = 334
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRR 109
CAVCK+ A ++PCAH+YH CI PWLA+ NSCPVCR+ +PTDD + +
Sbjct: 131 CAVCKEPFHLAAEAREMPCAHIYHHNCILPWLALHNSCPVCRHRMPTDDHDSTNAAAAQA 190
Query: 110 SSGDS 114
++G S
Sbjct: 191 AAGSS 195
>Os08g0464400 Zinc finger, RING-type domain containing protein
Length = 211
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 36/52 (69%)
Query: 49 GCAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPE 100
CA+CKD + A +LPC HLYH CI WL +RNSCPVCR LP+D+P+
Sbjct: 73 ACAICKDDLPLAAPARRLPCGHLYHSECIVQWLEMRNSCPVCRSRLPSDEPQ 124
>Os09g0242800 Zinc finger, RING-type domain containing protein
Length = 163
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEK 103
C+VC + IA + +LPCAH YH CI PWL IR++CP+CR ELP D E+
Sbjct: 70 CSVCTEEIAVADAVVRLPCAHWYHAGCISPWLGIRSTCPMCRAELPASDDAAEE 123
>Os03g0351800 Zinc finger, RING-type domain containing protein
Length = 283
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 31/46 (67%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELP 95
C VCKD G A ++PC HLYH CI PWL NSCPVCRYELP
Sbjct: 187 CPVCKDKFELGSEAREMPCKHLYHSDCIVPWLEQHNSCPVCRYELP 232
>Os01g0276600 Zinc finger, RING-type domain containing protein
Length = 329
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPT 96
CAVC + A GE AT++PC H +H CI PWL + +SCPVCR++LPT
Sbjct: 213 CAVCLEDYAAGERATEMPCRHRFHAKCIVPWLKMHSSCPVCRFQLPT 259
>Os09g0243200 Zinc finger, RING-type domain containing protein
Length = 155
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRR 109
CAVC + +A + +LPCAH YH CI PWL IR +CP CR ELP +P RV RR
Sbjct: 71 CAVCTEEVAARQAVVRLPCAHWYHAGCIGPWLRIRTNCPTCRAELPR-EPAAADWRVPRR 129
Query: 110 SS 111
+
Sbjct: 130 PA 131
>Os05g0488800 Zinc finger, RING-type domain containing protein
Length = 323
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDD 98
C+VC D + G A Q+PC H +H +CI PWL + +SCPVCR+ELP+++
Sbjct: 199 CSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFELPSEE 247
>Os12g0140233 Zinc finger, RING-type domain containing protein
Length = 199
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 48 RGCAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEY 101
RGCAVC + GE T++PC+H +H CI WL + + CP+CR+ +PT D Y
Sbjct: 146 RGCAVCLEDFEAGEKLTRMPCSHCFHATCILDWLRLSHRCPLCRFPMPTQDQSY 199
>Os02g0767600
Length = 335
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYEL 94
C VCK+ GE A Q+PC H+YH CI PWL + NSCPVCRY+L
Sbjct: 199 CPVCKEDFELGEAARQMPCKHVYHSDCIVPWLRLHNSCPVCRYQL 243
>Os12g0140700 Zinc finger, RING-type domain containing protein
Length = 197
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 48 RGCAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEY 101
RGCAVC + GE T++PC+H +H CI WL + + CP+CR+ +PT D Y
Sbjct: 144 RGCAVCLEDFEAGEKLTRMPCSHCFHATCILDWLRLSHRCPLCRFPMPTQDQSY 197
>Os03g0324900 Zinc finger, RING-type domain containing protein
Length = 320
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 36/66 (54%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRR 109
C VC D G A ++PC H +H CI PWL +SCPVCRY+LPTDD V
Sbjct: 212 CPVCLDEFEAGGEAREMPCKHRFHDGCILPWLEAHSSCPVCRYQLPTDDEPTAGNVVVAA 271
Query: 110 SSGDSV 115
GD +
Sbjct: 272 EGGDEL 277
>Os09g0434200 Zinc finger, RING-type domain containing protein
Length = 320
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEY 101
CAVC++ + + +LPC HL+H C++PWL NSCP+CR+EL TDD Y
Sbjct: 240 CAVCRESLLVDDKMQELPCKHLFHPPCLKPWLDENNSCPICRHELRTDDHVY 291
>Os05g0495000
Length = 350
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 31/46 (67%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELP 95
C VC+D G A ++PCAHLYH CI PWL NSCPVCR+ LP
Sbjct: 239 CPVCQDEFQLGAEAREMPCAHLYHADCIVPWLVHHNSCPVCRHSLP 284
>Os03g0812200 Zinc finger, RING-type domain containing protein
Length = 369
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 49 GCAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDD 98
GC+VC + G A ++PC H +H CI PWL + +SCP+CR++LPT++
Sbjct: 254 GCSVCLEDFEMGTEAKEMPCQHKFHSQCILPWLELHSSCPICRFQLPTEE 303
>Os03g0271600 Zinc finger, RING-type domain containing protein
Length = 279
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYEL 94
CAVC++ G A ++PC H+YH CI PWL++RNSCPVCR EL
Sbjct: 135 CAVCQEAFEPGASAREMPCKHVYHQDCILPWLSLRNSCPVCRREL 179
>Os01g0802000 Zinc finger, RING-type domain containing protein
Length = 329
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 29/46 (63%)
Query: 50 CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELP 95
C VC D G A ++PC HLYH CI PWL NSCPVCR+ LP
Sbjct: 192 CPVCTDKFEVGTEAREMPCKHLYHAECIIPWLVQHNSCPVCRHPLP 237
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,785,847
Number of extensions: 121189
Number of successful extensions: 610
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 27
Length of query: 124
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 36
Effective length of database: 12,440,969
Effective search space: 447874884
Effective search space used: 447874884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)