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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0119200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.89 (0.0354) R2 : 0.432
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.12 (0.0996) R2dC : 0.189 R2C : 0.3
β3 : 1.4 (0.163) R2dE : 0.118 R2E : 0.159
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.502 (0.0795) R2dN8 : 0.0738 R2N8 : 0.00465
σ : 0.654
deviance : 197.44
__
_____
C
peak time of C : 4.59
E
wheather : temperature
threshold : 27.45
memory length : 115
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.61 0.654 3.86 0.425 1.06 1.49 0.395 -0.259 0.573 4.72 27.8 114 -- --
193.71 0.648 3.86 0.385 1.08 1.49 0.37 -- 0.568 4.69 27.43 115 -- --
193.94 0.649 3.87 0.385 1.05 1.5 -- -0.0394 0.562 4.73 27.94 113 -- --
193.94 0.649 3.87 0.383 1.05 1.51 -- -- 0.562 4.73 27.95 113 -- --
232.34 0.71 3.86 0.612 -- 2.6 -- -0.129 0.658 -- 32.41 166 -- --
224.75 0.703 3.94 0.004 1.47 -- 0.406 -- 0.241 4.23 -- -- -- --
225.21 0.703 3.94 -0.000111 1.47 -- -- -- 0.239 4.22 -- -- -- --
232.17 0.71 3.86 0.615 -- 2.51 -- -- 0.675 -- 31.83 162 -- --
197.44 0.654 3.89 -- 1.12 1.4 -- -- 0.502 4.59 27.45 115 -- --
341.72 0.864 3.95 0.0587 -- -- -- -- 0.278 -- -- -- -- --
225.21 0.702 3.94 -- 1.47 -- -- -- 0.239 4.22 -- -- -- --
241.28 0.723 3.88 -- -- 2.34 -- -- 0.573 -- 32.2 153 -- --
341.81 0.863 3.95 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 185.05 temperature 10.0 270 > th dose dependent rect. 5 22
2 185.18 temperature 30.0 90 < th dose dependent rect. 14 21
14 187.08 temperature 30.0 30 < th dose dependent rect. 3 23
19 187.34 temperature 30.0 270 < th dose dependent rect. 11 21
28 187.80 humidity 90.0 14400 < th dose independent rect. 21 1
30 187.84 temperature 20.0 270 > th dose independent rect. 5 22
49 189.34 precipitation 0.1 43200 > th dose independent rect. 17 1
52 189.45 precipitation 0.1 43200 < th dose independent rect. 17 1
53 189.45 precipitation 0.1 43200 < th dose dependent rect. 17 1
54 189.46 humidity 90.0 14400 > th dose independent rect. 21 1
60 189.63 humidity 50.0 14400 > th dose independent rect. 17 17
61 189.65 temperature 30.0 10 < th dose dependent rect. 12 23
63 189.74 temperature 15.0 270 > th dose dependent rect. 16 22
70 189.95 humidity 80.0 14400 > th dose dependent rect. 18 1
74 190.09 humidity 50.0 14400 > th dose independent rect. 16 19
75 190.18 radiation 1.0 43200 < th dose dependent rect. 1 3
83 190.49 humidity 90.0 14400 > th dose dependent rect. 21 1
84 190.65 humidity 80.0 14400 > th dose independent rect. 17 1
85 190.71 precipitation 0.1 43200 > th dose dependent rect. 17 1
86 190.77 humidity 80.0 14400 < th dose independent rect. 17 1
88 190.85 temperature 20.0 270 > th dose dependent sin 11 NA
91 190.91 humidity 90.0 14400 < th dose independent rect. 17 5
105 191.14 temperature 30.0 90 < th dose dependent rect. 17 17
106 191.15 temperature 15.0 90 > th dose dependent rect. 9 18
112 191.26 humidity 50.0 14400 < th dose dependent rect. 16 19
121 191.41 temperature 15.0 90 > th dose dependent sin 8 NA
135 191.55 precipitation 0.1 14400 > th dose independent rect. 17 5
143 191.62 precipitation 0.1 14400 < th dose independent rect. 17 5
144 191.62 precipitation 0.1 14400 < th dose dependent rect. 17 5
159 191.78 precipitation 0.1 14400 > th dose dependent rect. 17 10
167 191.91 humidity 80.0 14400 > th dose dependent rect. 17 5
168 191.94 humidity 50.0 14400 < th dose independent rect. 17 18
175 192.03 temperature 30.0 270 < th dose dependent sin 10 NA
186 192.20 temperature 30.0 30 < th dose dependent rect. 23 23
189 192.25 precipitation 0.1 14400 > th dose independent rect. 17 9
190 192.25 humidity 60.0 14400 < th dose dependent rect. 17 16
191 192.27 precipitation 0.1 14400 < th dose independent rect. 17 9
192 192.27 precipitation 0.1 14400 < th dose dependent rect. 17 9
210 192.53 temperature 30.0 90 < th dose dependent sin 8 NA
212 192.54 radiation 1.0 43200 < th dose dependent rect. 20 8
214 192.55 precipitation 0.1 14400 > th dose dependent rect. 17 6
224 192.64 temperature 20.0 270 > th dose dependent rect. 18 9
227 192.65 humidity 50.0 14400 < th dose independent rect. 15 20
234 192.70 temperature 30.0 1440 < th dose dependent rect. 10 1
240 192.77 wind 9.0 43200 > th dose dependent rect. 20 1
244 192.82 temperature 15.0 1440 > th dose dependent rect. 10 1
263 192.94 humidity 50.0 14400 < th dose independent sin 11 NA
275 193.02 humidity 50.0 14400 > th dose independent sin 11 NA
304 193.17 humidity 90.0 14400 > th dose independent rect. 18 4
322 193.24 precipitation 0.1 4320 > th dose dependent rect. 22 21
339 193.30 precipitation 0.1 14400 > th dose dependent rect. 11 16
343 193.32 temperature 30.0 4320 < th dose dependent rect. 17 1
372 193.45 precipitation 0.1 14400 > th dose dependent sin 16 NA
374 193.46 precipitation 0.1 4320 > th dose dependent rect. 1 17
416 193.60 temperature 30.0 90 < th dose dependent rect. 19 15
442 193.72 humidity 50.0 14400 > th dose independent rect. 15 8
486 193.86 precipitation 0.1 4320 > th dose independent rect. 13 6
499 193.93 precipitation 0.1 4320 < th dose independent rect. 13 6
502 193.93 precipitation 0.1 4320 < th dose dependent rect. 13 6
518 193.97 temperature 20.0 270 > th dose dependent rect. 19 15
520 193.98 wind 9.0 43200 > th dose independent rect. 20 1
549 194.05 temperature 10.0 720 > th dose dependent rect. 14 13
557 194.09 wind 9.0 43200 < th dose independent rect. 20 1
581 194.17 humidity 50.0 14400 < th dose independent rect. 15 3
606 194.19 precipitation 0.1 4320 > th dose dependent sin 0 NA
608 194.20 temperature 10.0 720 > th dose dependent rect. 11 16
620 194.23 temperature 10.0 4320 > th dose dependent rect. 9 12
623 194.24 temperature 10.0 4320 > th dose dependent rect. 9 10
646 194.31 temperature 10.0 4320 > th dose dependent rect. 17 1
682 194.36 wind 1.0 43200 < th dose dependent rect. 20 1
689 194.39 temperature 10.0 4320 > th dose dependent rect. 13 1
713 194.42 temperature 30.0 720 < th dose dependent rect. 8 16
771 194.52 temperature 10.0 4320 > th dose dependent rect. 13 6
791 194.55 precipitation 0.1 14400 > th dose independent rect. 11 12
811 194.58 precipitation 0.1 14400 < th dose independent rect. 11 12
816 194.58 precipitation 0.1 14400 < th dose dependent rect. 11 12
853 194.64 temperature 25.0 270 < th dose independent rect. 14 18
860 194.65 radiation 1.0 43200 < th dose dependent rect. 23 1
877 194.67 temperature 20.0 90 > th dose independent rect. 9 18
897 194.70 precipitation 0.1 14400 < th dose independent rect. 11 15
901 194.70 precipitation 0.1 14400 < th dose dependent rect. 11 15
908 194.72 precipitation 0.1 14400 > th dose independent rect. 11 15
915 194.73 precipitation 0.1 14400 < th dose independent sin 17 NA
917 194.73 precipitation 0.1 14400 < th dose dependent sin 17 NA
921 194.74 precipitation 0.1 14400 > th dose independent sin 17 NA
928 194.75 humidity 50.0 14400 > th dose dependent rect. 21 1
967 194.80 temperature 10.0 4320 > th dose dependent sin 21 NA