Os08g0464400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os08g0464400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.54 | 0.233 | 11.7 | 1.6 | 0.376 | -0.771 | 0.00387 | 1.66 | 0.428 | 1.79 | 16.39 | 587 | -- | -- |
| 26.64 | 0.24 | 11.8 | 1.32 | 0.396 | -0.798 | 0.0545 | -- | 0.347 | 1.62 | 12.86 | 664 | -- | -- |
| 24.54 | 0.231 | 11.7 | 1.6 | 0.376 | -0.771 | -- | 1.65 | 0.428 | 1.8 | 16.4 | 587 | -- | -- |
| 26.56 | 0.24 | 11.8 | 1.29 | 0.429 | -0.75 | -- | -- | 0.344 | 2.07 | 14.8 | 716 | -- | -- |
| 28.67 | 0.249 | 11.7 | 1.6 | -- | -0.868 | -- | 1.6 | 0.449 | -- | 18.9 | 258 | -- | -- |
| 33.96 | 0.273 | 11.8 | 1.1 | 0.445 | -- | -0.0483 | -- | 0.225 | 3.64 | -- | -- | -- | -- |
| 33.97 | 0.273 | 11.8 | 1.11 | 0.445 | -- | -- | -- | 0.225 | 3.62 | -- | -- | -- | -- |
| 30.5 | 0.257 | 11.8 | 1.32 | -- | -0.937 | -- | -- | 0.369 | -- | 15.72 | 211 | -- | -- |
| 65.76 | 0.378 | 11.8 | -- | 0.45 | -0.16 | -- | -- | 0.121 | 3.31 | 11.86 | 594 | -- | -- |
| 44.97 | 0.313 | 11.8 | 1.12 | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
| 66.17 | 0.381 | 11.8 | -- | 0.467 | -- | -- | -- | 0.102 | 3.6 | -- | -- | -- | -- |
| 71.61 | 0.394 | 11.8 | -- | -- | -0.528 | -- | -- | 0.15 | -- | 24.6 | 146 | -- | -- |
| 78.29 | 0.413 | 11.8 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 3 | 22.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 4 | 22.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 7 | 22.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 11 | 22.83 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 14 | 22.87 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 40 | 23.02 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 46 | 23.06 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 50 | 23.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 51 | 23.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 52 | 23.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 59 | 23.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 68 | 23.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 77 | 23.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 97 | 23.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 119 | 23.25 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 145 | 23.32 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 9 |
| 157 | 23.36 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 12 |
| 200 | 23.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 201 | 23.45 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 228 | 23.52 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 243 | 23.55 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 384 | 23.85 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 399 | 23.87 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 521 | 24.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 547 | 24.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 609 | 24.25 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 624 | 24.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 752 | 24.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 20 |
| 781 | 24.51 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 843 | 24.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 951 | 24.78 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |