Os02g0727700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os02g0727700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.42 | 0.48 | 7.79 | -1.16 | 1.56 | -1.36 | -0.135 | 0.604 | -0.342 | 5.26 | 25.1 | 745 | -- | -- |
| 104.9 | 0.477 | 7.78 | -1.07 | 1.55 | -1.42 | -0.0552 | -- | -0.325 | 5.28 | 25.09 | 778 | -- | -- |
| 104.44 | 0.476 | 7.79 | -1.16 | 1.55 | -1.36 | -- | 0.589 | -0.344 | 5.28 | 25.2 | 777 | -- | -- |
| 104.9 | 0.477 | 7.78 | -1.06 | 1.55 | -1.42 | -- | -- | -0.325 | 5.3 | 25.1 | 788 | -- | -- |
| 215.89 | 0.684 | 7.82 | -1.2 | -- | -1.55 | -- | 0.676 | -0.337 | -- | 31.5 | 1233 | -- | -- |
| 134.46 | 0.544 | 7.72 | -0.66 | 1.52 | -- | -0.314 | -- | -0.0241 | 4.75 | -- | -- | -- | -- |
| 134.71 | 0.544 | 7.71 | -0.658 | 1.52 | -- | -- | -- | -0.0225 | 4.78 | -- | -- | -- | -- |
| 216.08 | 0.685 | 7.82 | -1.1 | -- | -1.61 | -- | -- | -0.344 | -- | 29.84 | 1238 | -- | -- |
| 131.1 | 0.533 | 7.75 | -- | 1.54 | -1.01 | -- | -- | -0.182 | 5.11 | 25.16 | 733 | -- | -- |
| 257.24 | 0.749 | 7.73 | -0.601 | -- | -- | -- | -- | 0.0171 | -- | -- | -- | -- | -- |
| 146.14 | 0.565 | 7.7 | -- | 1.51 | -- | -- | -- | 0.0509 | 4.79 | -- | -- | -- | -- |
| 243.17 | 0.726 | 7.75 | -- | -- | -1.1 | -- | -- | -0.0769 | -- | 36.95 | 1233 | -- | -- |
| 266.77 | 0.762 | 7.71 | -- | -- | -- | -- | -- | 0.0838 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 3 | 94.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 6 | 95.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 7 | 95.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 10 |
| 9 | 95.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 17 |
| 13 | 95.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 29 | 96.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 46 | 96.91 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 64 | 97.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 67 | 97.37 | temperature | 25 | 270 | < th | dose dependent | sin | 2 | NA |
| 79 | 97.57 | temperature | 25 | 10 | < th | dose dependent | sin | 1 | NA |
| 108 | 98.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 112 | 98.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 132 | 98.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 8 |
| 134 | 98.32 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 144 | 98.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 489 | 101.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 13 |
| 522 | 101.20 | radiation | 1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 576 | 101.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 604 | 101.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 616 | 101.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 651 | 101.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 684 | 102.09 | temperature | 15 | 10 | > th | dose dependent | sin | 2 | NA |
| 695 | 102.13 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 7 |
| 725 | 102.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 740 | 102.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 755 | 102.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 880 | 102.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 977 | 103.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 986 | 103.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 18 |