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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0243200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.47 (0.0478) R2 : 0.835
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.08 (0.12) R2dC : 0.651 R2C : 0.705
β3 : -2.72 (0.149) R2dE : 0.122 R2E : 0.176
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.633 (0.101) R2dN8 : 0.0187 R2N8 : -0.00251
σ : 0.893
deviance : 367.99
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_____
C
peak time of C : 20.6
E
wheather : temperature
threshold : 13.76
memory length : 8
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5
open length of G : 18.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
344.94 0.873 6.45 0.477 4.99 -2.7 -2.47 0.263 0.725 20.6 14.97 10 5.03 18.1
343.86 0.87 6.46 0.441 4.98 -2.71 -2.53 -- 0.712 20.6 14.98 9 5.03 18.2
361.61 0.892 6.44 0.668 4.98 -2.75 -- 1.34 0.756 20.6 15.13 7 5.05 18.3
360.72 0.885 6.47 0.617 5.06 -2.78 -- -- 0.702 20.6 14.55 8 5.04 18.9
631.81 1.18 6.29 0.455 -- -4.93 -- 2.55 0.823 -- 1.088 6 4.63 11.3
454.3 0.999 6.54 0.0365 5.4 -- -1.96 -- 0.361 21.8 -- -- -- --
468.95 1.01 6.54 0.11 5.41 -- -- -- 0.364 21.8 -- -- -- --
628.73 1.17 6.34 0.515 -- -4.92 -- -- 0.621 -- 0.6765 11 4.43 11.4
367.99 0.893 6.47 -- 5.08 -2.72 -- -- 0.633 20.6 13.76 8 5 18.9
2217.63 2.2 6.39 0.166 -- -- -- -- 0.36 -- -- -- -- --
469.27 1.01 6.54 -- 5.41 -- -- -- 0.351 21.8 -- -- -- --
615.95 1.16 6.37 -- -- -4.75 -- -- 0.584 -- -5.516 27 4.25 11.5
2218.36 2.2 6.4 -- -- -- -- -- 0.342 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 347.10 temperature 15 10 > th dose dependent rect. 5 18
12 362.53 temperature 15 30 > th dose dependent rect. 9 14
21 364.38 temperature 15 90 > th dose dependent rect. 7 16
25 364.98 temperature 15 10 > th dose dependent rect. 7 16
41 368.12 temperature 25 90 < th dose independent rect. 11 17
48 369.59 temperature 30 10 < th dose dependent rect. 12 17
81 373.34 temperature 25 30 > th dose independent rect. 9 14
87 373.88 radiation 20 10 < th dose dependent rect. 23 17
144 378.37 temperature 30 270 < th dose dependent rect. 11 6
160 379.41 radiation 1 30 < th dose independent rect. 23 19
173 380.43 temperature 30 10 < th dose dependent rect. 23 21
174 380.45 temperature 30 10 < th dose dependent rect. 6 23
181 380.98 temperature 30 10 < th dose dependent rect. 8 21
184 381.22 temperature 30 720 < th dose dependent rect. 11 3
192 381.52 temperature 25 30 > th dose independent rect. 7 16
238 383.23 temperature 15 720 > th dose dependent rect. 9 6
256 384.25 temperature 15 270 > th dose dependent rect. 16 7
267 384.70 temperature 30 10 < th dose dependent rect. 23 23
279 384.98 temperature 25 270 < th dose independent rect. 11 6
280 385.02 radiation 1 270 < th dose independent rect. 21 21
322 386.57 humidity 80 10 > th dose independent rect. 23 21
352 387.57 temperature 25 270 > th dose independent rect. 5 17
361 387.76 humidity 50 10 > th dose dependent rect. 13 16
374 387.99 temperature 30 10 < th dose dependent rect. 21 23
389 388.47 temperature 25 30 > th dose independent rect. 5 18
396 388.62 humidity 80 10 > th dose independent rect. 23 19
406 388.86 temperature 30 10 < th dose dependent rect. 23 19
421 389.29 temperature 30 10 < th dose dependent rect. 12 6
431 389.45 temperature 25 30 < th dose independent rect. 6 23
433 389.51 temperature 25 720 > th dose independent rect. 9 5
440 389.64 temperature 20 720 > th dose dependent rect. 11 2
458 389.92 radiation 1 270 < th dose dependent rect. 21 21
461 389.96 humidity 50 270 > th dose dependent rect. 10 7
468 390.02 humidity 70 10 > th dose dependent rect. 23 21
480 390.21 humidity 70 10 > th dose dependent rect. 23 19
492 390.49 humidity 70 10 > th dose dependent rect. 6 23
500 390.70 temperature 30 10 < th dose dependent rect. 10 10
506 390.79 temperature 25 270 > th dose independent rect. 16 6
510 390.83 temperature 30 720 < th dose dependent sin 0 NA
513 390.88 temperature 25 720 < th dose independent rect. 11 2
525 391.11 temperature 25 30 < th dose independent sin 18 NA
613 392.46 atmosphere 1010 10 < th dose independent rect. 5 8
646 392.96 temperature 25 720 > th dose independent rect. 11 1
652 393.01 atmosphere 1010 10 < th dose independent rect. 5 18
653 393.01 humidity 50 90 > th dose dependent rect. 13 15
704 393.57 temperature 30 10 < th dose dependent rect. 10 23
714 393.76 atmosphere 1010 90 < th dose independent rect. 4 19
748 394.18 temperature 30 90 < th dose independent rect. 23 19
757 394.27 radiation 20 10 < th dose dependent rect. 6 23
768 394.38 radiation 1 10 < th dose independent rect. 23 21
780 394.50 wind 7 14400 > th dose dependent rect. 16 1
804 394.86 temperature 25 30 > th dose independent sin 18 NA
805 394.89 wind 9 43200 < th dose independent rect. 17 5
806 394.89 temperature 30 10 < th dose dependent rect. 19 23
817 395.04 atmosphere 1015 10 < th dose dependent rect. 5 8
834 395.28 temperature 10 270 > th dose dependent rect. 14 22
835 395.29 wind 9 43200 > th dose independent rect. 17 5
850 395.45 temperature 20 10 > th dose dependent rect. 9 23
855 395.51 temperature 15 10 > th dose dependent rect. 17 20
870 395.61 wind 7 43200 > th dose dependent rect. 17 5
879 395.68 temperature 30 10 < th dose dependent rect. 13 23
889 395.84 temperature 25 720 > th dose dependent rect. 19 19
906 396.05 humidity 50 14400 < th dose dependent rect. 16 1
908 396.07 temperature 30 10 < th dose dependent no NA NA
913 396.11 radiation 1 43200 < th dose dependent rect. 21 3
917 396.14 temperature 30 10 < th dose dependent sin 19 NA
928 396.22 temperature 20 10 > th dose dependent rect. 17 23
932 396.25 humidity 80 270 > th dose independent rect. 11 3
939 396.32 radiation 1 10 < th dose dependent rect. 23 21
981 396.68 temperature 20 10 > th dose dependent rect. 24 23
984 396.69 temperature 20 10 > th dose dependent rect. 7 23
994 396.79 wind 9 43200 > th dose dependent rect. 16 7