BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0243200 Os09g0243200|AK107718
         (155 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0243200  Zinc finger, RING-type domain containing protein    241   2e-64
Os09g0242800  Zinc finger, RING-type domain containing protein    108   2e-24

>Os09g0243200 Zinc finger, RING-type domain containing protein
          Length = 155

 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/155 (80%), Positives = 124/155 (80%)

Query: 1   MDGEMDWIAARFVLSAIMGVHPLVAVDDAGADDEHFPVDDAAAVHGHASXXXXXXXXXXX 60
           MDGEMDWIAARFVLSAIMGVHPLVAVDDAGADDEHFPVDDAAAVHGHAS           
Sbjct: 1   MDGEMDWIAARFVLSAIMGVHPLVAVDDAGADDEHFPVDDAAAVHGHASPPPVALPAAVL 60

Query: 61  XXXXXXXXXXXXXXXXXXXXRQAVVRLPCAHWYHAGCIGPWLRIRTNCPTCRAELPREPA 120
                               RQAVVRLPCAHWYHAGCIGPWLRIRTNCPTCRAELPREPA
Sbjct: 61  APEEVAGAVVCAVCTEEVAARQAVVRLPCAHWYHAGCIGPWLRIRTNCPTCRAELPREPA 120

Query: 121 AADWRVPRRPAVAETAGSRLRREASYTMLAGTLPS 155
           AADWRVPRRPAVAETAGSRLRREASYTMLAGTLPS
Sbjct: 121 AADWRVPRRPAVAETAGSRLRREASYTMLAGTLPS 155



>Os09g0242800 Zinc finger, RING-type domain containing protein
          Length = 163

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 83/160 (51%), Gaps = 12/160 (7%)

Query: 1   MDGEMDWIAARFVLSAIMGVHPLVAVDDAGADDEHFPVDDAAAVHGHASXXXXXXXXX-- 58
           MD + DWI AR++LS+I+G +PLV VD    D+E FPV+D   V G A            
Sbjct: 1   MDDDGDWITARYLLSSILGRNPLV-VDYV--DEESFPVEDPPPVAGGARGGRQAVVSQPP 57

Query: 59  XXXXXXXXXXXXXXXXXXXXXXRQAVVRLPCAHWYHAGCIGPWLRIRTNCPTCRAELPRE 118
                                   AVVRLPCAHWYHAGCI PWL IR+ CP CRAELP  
Sbjct: 58  VVRATAGVAGTVCSVCTEEIAVADAVVRLPCAHWYHAGCISPWLGIRSTCPMCRAELPAS 117

Query: 119 PAAAD-------WRVPRRPAVAETAGSRLRREASYTMLAG 151
             AA+        + PR      +AG  +RR+ASY +LAG
Sbjct: 118 DDAAEEGGGAGREKPPRAGRAGTSAGGGVRRDASYELLAG 157



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,921,812
Number of extensions: 170386
Number of successful extensions: 1002
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1003
Number of HSP's successfully gapped: 3
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 151 (62.8 bits)