Os09g0242800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os09g0242800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 187.02 | 0.643 | 7.98 | 1.44 | 0.154 | 1.82 | 1.41 | -1.48 | 1.02 | 16.6 | 26.81 | 10 | -- | -- |
| 189.98 | 0.642 | 7.98 | 1.45 | 0.2 | 1.9 | 2.15 | -- | 1.02 | 14.3 | 26.99 | 9 | -- | -- |
| 191.59 | 0.645 | 7.97 | 1.44 | 0.207 | 1.88 | -- | -1.84 | 1.03 | 14.8 | 26.39 | 9 | -- | -- |
| 207.43 | 0.671 | 7.98 | 1.5 | 0.173 | 1.83 | -- | -- | 1.03 | 16.1 | 27.49 | 9 | -- | -- |
| 192.96 | 0.647 | 7.98 | 1.43 | -- | 1.79 | -- | -1.82 | 1.02 | -- | 26.64 | 9 | -- | -- |
| 259.4 | 0.755 | 8.01 | 1.37 | 1.59 | -- | -1.51 | -- | 1 | 23.9 | -- | -- | -- | -- |
| 269.15 | 0.768 | 8.01 | 1.44 | 1.6 | -- | -- | -- | 1.01 | 23.7 | -- | -- | -- | -- |
| 208.72 | 0.673 | 7.97 | 1.5 | -- | 1.76 | -- | -- | 1.03 | -- | 27.49 | 9 | -- | -- |
| 268.05 | 0.763 | 8 | -- | 0.173 | 1.86 | -- | -- | 0.925 | 15.4 | 27.64 | 15 | -- | -- |
| 429.23 | 0.968 | 7.97 | 1.48 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 323.61 | 0.842 | 8.05 | -- | 1.61 | -- | -- | -- | 0.85 | 23.8 | -- | -- | -- | -- |
| 268.84 | 0.764 | 8.01 | -- | -- | 1.76 | -- | -- | 0.887 | -- | 27.5 | 13 | -- | -- |
| 487.27 | 1.03 | 8.01 | -- | -- | -- | -- | -- | 0.865 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 185.11 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 2 | 185.16 | radiation | 30 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 9 | 188.69 | radiation | 30 | 10 | < th | dose dependent | no | NA | NA |
| 10 | 188.99 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 12 | 189.65 | radiation | 20 | 10 | < th | dose dependent | sin | 23 | NA |
| 13 | 190.31 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 20 | 190.85 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 29 | 191.87 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 51 | 194.66 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 56 | 195.19 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 67 | 196.64 | radiation | 10 | 10 | > th | dose independent | sin | 23 | NA |
| 68 | 196.76 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 78 | 197.32 | radiation | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 83 | 197.47 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 14 |
| 88 | 197.75 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 109 | 199.25 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 112 | 199.35 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 17 |
| 120 | 199.59 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 18 |
| 139 | 200.27 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 11 |
| 160 | 200.83 | radiation | 10 | 10 | > th | dose independent | rect. | 15 | 23 |
| 162 | 200.85 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 244 | 200.92 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 23 |
| 264 | 201.21 | radiation | 20 | 30 | < th | dose independent | rect. | 21 | 23 |
| 273 | 201.43 | radiation | 20 | 30 | < th | dose independent | sin | 1 | NA |
| 275 | 201.45 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 279 | 201.60 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 308 | 202.40 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 12 |
| 319 | 202.42 | radiation | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 325 | 202.50 | radiation | 20 | 10 | < th | dose independent | no | NA | NA |
| 332 | 202.67 | radiation | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 404 | 204.34 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 22 |
| 417 | 204.65 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 418 | 204.67 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 419 | 204.75 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 9 |
| 433 | 204.79 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 434 | 204.79 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 500 | 204.83 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 526 | 205.40 | radiation | 1 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 542 | 205.64 | radiation | 20 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 574 | 205.85 | humidity | 50 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 575 | 205.88 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 586 | 206.13 | radiation | 20 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 587 | 206.18 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 604 | 206.31 | radiation | 1 | 10 | > th | dose dependent | sin | 0 | NA |
| 613 | 206.52 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 19 |
| 637 | 206.91 | humidity | 70 | 10 | > th | dose independent | rect. | 13 | 20 |
| 641 | 207.00 | radiation | 10 | 10 | < th | dose independent | rect. | 9 | 23 |
| 741 | 207.83 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 12 |
| 817 | 208.68 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 842 | 208.91 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 846 | 208.95 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 21 |
| 850 | 208.98 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 854 | 209.03 | radiation | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 869 | 209.32 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 17 |
| 898 | 209.86 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 927 | 210.17 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 7 |
| 935 | 210.27 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 21 |
| 948 | 210.48 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 954 | 210.55 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 976 | 210.86 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 997 | 211.02 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 18 |