BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0242800 Os09g0242800|AK061263
         (163 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0242800  Zinc finger, RING-type domain containing protein    189   6e-49
Os09g0243200  Zinc finger, RING-type domain containing protein    105   1e-23
Os02g0727700  Zinc finger, RING-type domain containing protein     65   3e-11
Os06g0633500  Zinc finger, RING-type domain containing protein     63   9e-11

>Os09g0242800 Zinc finger, RING-type domain containing protein
          Length = 163

 Score =  189 bits (481), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 101/163 (61%)

Query: 1   MDDDGDWITARYLLSSILGRNPLVVDYVDEESFPVEDXXXXXXXXXXXXXXXXSQPPXXX 60
           MDDDGDWITARYLLSSILGRNPLVVDYVDEESFPVED                SQPP   
Sbjct: 1   MDDDGDWITARYLLSSILGRNPLVVDYVDEESFPVEDPPPVAGGARGGRQAVVSQPPVVR 60

Query: 61  XXXXXXXXXCSVCTEEIAVADAVVRLPCAHWYHAGCISPWLGIRSTCPMCRAELXXXXXX 120
                    CSVCTEEIAVADAVVRLPCAHWYHAGCISPWLGIRSTCPMCRAEL      
Sbjct: 61  ATAGVAGTVCSVCTEEIAVADAVVRLPCAHWYHAGCISPWLGIRSTCPMCRAELPASDDA 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDASYELLAGGGVLSG 163
                                       DASYELLAGGGVLSG
Sbjct: 121 AEEGGGAGREKPPRAGRAGTSAGGGVRRDASYELLAGGGVLSG 163



>Os09g0243200 Zinc finger, RING-type domain containing protein
          Length = 155

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 71/123 (57%), Gaps = 17/123 (13%)

Query: 1   MDDDGDWITARYLLSSILGRNPLV-VD--YVDEESFPVEDXXXXXXXXXXXXXXXXSQPP 57
           MD + DWI AR++LS+I+G +PLV VD    D+E FPV+D                S PP
Sbjct: 1   MDGEMDWIAARFVLSAIMGVHPLVAVDDAGADDEHFPVDD--------AAAVHGHASPPP 52

Query: 58  XXXXXXXXX------XXXCSVCTEEIAVADAVVRLPCAHWYHAGCISPWLGIRSTCPMCR 111
                             C+VCTEE+A   AVVRLPCAHWYHAGCI PWL IR+ CP CR
Sbjct: 53  VALPAAVLAPEEVAGAVVCAVCTEEVAARQAVVRLPCAHWYHAGCIGPWLRIRTNCPTCR 112

Query: 112 AEL 114
           AEL
Sbjct: 113 AEL 115



>Os02g0727700 Zinc finger, RING-type domain containing protein
          Length = 311

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 32/45 (71%)

Query: 70  CSVCTEEIAVADAVVRLPCAHWYHAGCISPWLGIRSTCPMCRAEL 114
           C+VC + +   +   RLPCAH YH GCI PWL IR+TCP+CR EL
Sbjct: 231 CAVCKDGMEAGERARRLPCAHLYHDGCILPWLAIRNTCPLCRHEL 275



>Os06g0633500 Zinc finger, RING-type domain containing protein
          Length = 124

 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 32/45 (71%)

Query: 70  CSVCTEEIAVADAVVRLPCAHWYHAGCISPWLGIRSTCPMCRAEL 114
           C+VC + IA  +   +LPCAH YH  CI PWL IR++CP+CR EL
Sbjct: 50  CAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYEL 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,009,111
Number of extensions: 93880
Number of successful extensions: 556
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 6
Length of query: 163
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 70
Effective length of database: 12,179,899
Effective search space: 852592930
Effective search space used: 852592930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)