FiT-DB / Search/ Help/ Sample detail

Os06g0633500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0177) R2 : 0.0121
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0877 (0.0372) R2dN8 : 0.0156 R2N8 : 0.0121
σ : 0.333
deviance : 50.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.13 0.226 11.2 0.74 0.425 -0.983 -0.407 -1.49 0.137 6.15 20.26 323 -- --
23.37 0.225 11.2 0.707 0.408 -0.395 -0.565 -- 0.117 6.26 22.39 356 -- --
23.5 0.226 11.2 0.747 0.43 -0.953 -- -1.48 0.136 6.05 20.5 331 -- --
24.06 0.228 11.2 0.715 0.417 -0.387 -- -- 0.12 6.07 22.36 358 -- --
32.54 0.267 11.2 0.754 -- -0.363 -- -0.0275 0.153 -- 20.5 331 -- --
24.88 0.234 11.2 0.805 0.393 -- -0.535 -- 0.167 6.28 -- -- -- --
25.57 0.237 11.2 0.798 0.391 -- -- -- 0.169 6.13 -- -- -- --
32.13 0.264 11.2 0.713 -- -0.361 -- -- 0.124 -- 22.7 1365 -- --
28.28 0.248 11.3 -- 0.391 -0.628 -- -- -0.0599 6.2 21.1 47520 -- --
33.48 0.27 11.2 0.809 -- -- -- -- 0.177 -- -- -- -- --
42.36 0.304 11.2 -- 0.402 -- -- -- 0.0799 6.03 -- -- -- --
36.18 0.28 11.3 -- -- -0.637 -- -- -0.0558 -- 21.2 47520 -- --
50.75 0.333 11.3 -- -- -- -- -- 0.0877 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.05 temperature 25 10 > th dose independent rect. 4 5
3 22.10 temperature 25 10 > th dose independent rect. 1 8
9 22.27 temperature 20 10 > th dose independent rect. 23 23
12 22.45 radiation 1 14400 < th dose dependent rect. 23 1
13 22.45 temperature 20 30 > th dose dependent rect. 23 10
14 22.47 wind 7 4320 < th dose independent rect. 20 8
15 22.52 wind 7 4320 > th dose independent rect. 20 8
18 22.54 radiation 10 720 > th dose independent rect. 16 1
20 22.55 radiation 20 720 < th dose dependent rect. 14 17
21 22.57 wind 9 4320 < th dose independent rect. 18 10
36 22.58 wind 7 4320 > th dose dependent rect. 20 8
38 22.60 wind 9 4320 > th dose dependent rect. 18 11
40 22.63 radiation 10 720 < th dose dependent rect. 14 10
44 22.64 wind 7 4320 > th dose independent rect. 18 10
62 22.70 radiation 10 720 < th dose independent rect. 14 2
63 22.70 radiation 1 720 > th dose dependent rect. 16 1
76 22.73 radiation 10 720 > th dose independent rect. 14 3
90 22.74 wind 9 4320 < th dose independent rect. 18 5
91 22.74 wind 7 4320 < th dose independent rect. 20 5
92 22.74 wind 9 4320 < th dose independent rect. 18 7
99 22.75 wind 9 4320 < th dose independent rect. 20 1
102 22.75 temperature 20 10 > th dose independent rect. 19 14
103 22.75 wind 5 4320 > th dose dependent rect. 20 4
109 22.77 radiation 20 720 < th dose dependent rect. 14 2
110 22.77 wind 9 4320 > th dose dependent rect. 18 3
112 22.77 radiation 10 720 < th dose dependent rect. 11 13
115 22.78 wind 9 4320 < th dose independent rect. 18 3
120 22.79 wind 7 4320 > th dose independent rect. 20 5
122 22.79 wind 9 4320 < th dose independent rect. 17 16
123 22.79 radiation 10 720 > th dose independent rect. 14 16
141 22.80 radiation 10 720 < th dose dependent sin 15 NA
148 22.81 wind 7 4320 < th dose independent rect. 20 3
151 22.81 wind 9 4320 < th dose independent rect. 17 14
162 22.81 radiation 1 720 > th dose dependent rect. 16 14
176 22.83 wind 9 4320 > th dose independent rect. 18 3
181 22.83 radiation 10 720 < th dose independent rect. 14 10
214 22.85 wind 7 4320 > th dose independent rect. 20 2
222 22.85 wind 9 4320 < th dose independent rect. 20 14
224 22.85 temperature 20 270 > th dose independent rect. 11 22
264 22.88 wind 9 14400 > th dose independent rect. 10 1
266 22.88 wind 9 14400 < th dose independent rect. 10 1
286 22.89 temperature 20 10 > th dose independent rect. 15 18
291 22.89 temperature 10 10 > th dose dependent rect. 23 23
300 22.90 temperature 20 720 > th dose independent rect. 5 19
314 22.91 temperature 20 10 > th dose independent rect. 19 23
331 22.92 wind 9 4320 < th dose independent sin 12 NA
360 22.92 temperature 20 10 > th dose independent rect. 6 23
367 22.92 radiation 1 720 > th dose dependent rect. 14 16
418 22.95 humidity 80 1440 < th dose independent rect. 21 19
446 22.97 radiation 10 720 > th dose independent sin 14 NA
457 22.97 radiation 1 720 > th dose dependent rect. 14 3
477 22.98 temperature 20 720 > th dose independent rect. 21 5
478 22.98 temperature 20 720 > th dose independent rect. 20 7
480 22.98 radiation 10 720 < th dose independent rect. 14 16
522 22.99 wind 9 4320 > th dose independent rect. 20 14
526 22.99 temperature 20 720 < th dose independent rect. 8 19
537 23.00 wind 9 4320 > th dose independent sin 12 NA
550 23.00 temperature 20 720 < th dose independent rect. 6 18
554 23.00 temperature 20 10 > th dose independent rect. 12 21
562 23.00 wind 3 43200 < th dose dependent rect. 23 7
596 23.02 temperature 20 720 < th dose independent sin 16 NA
598 23.02 radiation 10 720 > th dose independent rect. 11 6
614 23.02 radiation 10 720 < th dose dependent rect. 11 7
627 23.03 wind 7 14400 < th dose independent rect. 6 1
636 23.03 humidity 80 720 > th dose independent rect. 12 17
640 23.03 temperature 20 10 > th dose independent rect. 10 23
647 23.04 temperature 20 720 < th dose independent sin 21 NA
733 23.05 temperature 20 270 < th dose independent rect. 5 22
735 23.05 wind 9 4320 > th dose dependent sin 12 NA
747 23.06 temperature 20 720 < th dose independent rect. 19 8
753 23.06 humidity 80 720 > th dose independent rect. 12 15
806 23.07 humidity 80 1440 > th dose independent rect. 21 19
813 23.07 temperature 20 10 > th dose independent rect. 15 23
890 23.10 temperature 20 720 > th dose independent sin 13 NA
915 23.11 atmosphere 995 14400 > th dose independent rect. 18 2
938 23.11 wind 7 14400 > th dose dependent rect. 10 1
953 23.12 wind 7 14400 > th dose independent rect. 6 1
954 23.12 atmosphere 995 14400 < th dose independent rect. 16 1
993 23.12 radiation 1 720 > th dose dependent sin 14 NA
994 23.12 atmosphere 995 14400 < th dose dependent rect. 16 1
996 23.12 wind 3 43200 < th dose dependent rect. 4 2