Os05g0488800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os05g0488800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.33 | 0.232 | 9.56 | -0.354 | 0.296 | 0.0611 | 0.231 | 1.48 | -0.0201 | 19.4 | 60.01 | 1483 | -- | -- |
| 26.79 | 0.241 | 9.54 | -0.198 | 0.295 | 0.282 | 0.26 | -- | 0.0485 | 19.6 | 63.61 | 2789 | -- | -- |
| 24.48 | 0.23 | 9.56 | -0.358 | 0.297 | 0.0617 | -- | 1.48 | -0.0193 | 19.3 | 60.03 | 1483 | -- | -- |
| 26.28 | 0.239 | 9.53 | -0.215 | 0.335 | 0.27 | -- | -- | 0.0951 | 19.1 | 62.84 | 20809 | -- | -- |
| 29.15 | 0.251 | 9.55 | -0.354 | -- | 0.0791 | -- | 1.46 | -0.018 | -- | 60.11 | 1470 | -- | -- |
| 28.25 | 0.249 | 9.55 | -0.189 | 0.298 | -- | 0.243 | -- | 0.00237 | 19.3 | -- | -- | -- | -- |
| 28.4 | 0.25 | 9.55 | -0.194 | 0.3 | -- | -- | -- | 0.00311 | 19.1 | -- | -- | -- | -- |
| 30.79 | 0.258 | 9.53 | -0.326 | -- | 0.328 | -- | -- | 0.079 | -- | 48.09 | 20015 | -- | -- |
| 27.48 | 0.244 | 9.53 | -- | 0.318 | 0.283 | -- | -- | 0.126 | 19.2 | 63.83 | 18131 | -- | -- |
| 33.13 | 0.269 | 9.55 | -0.2 | -- | -- | -- | -- | -0.00223 | -- | -- | -- | -- | -- |
| 29.39 | 0.254 | 9.55 | -- | 0.302 | -- | -- | -- | 0.0247 | 19.1 | -- | -- | -- | -- |
| 32.31 | 0.265 | 9.52 | -- | -- | 0.259 | -- | -- | 0.121 | -- | 63.36 | 18669 | -- | -- |
| 34.18 | 0.273 | 9.54 | -- | -- | -- | -- | -- | 0.0199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.34 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 2 | 22.38 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 3 | 22.48 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 4 | 22.49 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 5 | 22.49 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 10 | 22.52 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 17 | 22.59 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 20 | 22.60 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 46 | 22.75 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 61 | 22.78 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 69 | 22.80 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 70 | 22.80 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 71 | 22.80 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 77 | 22.82 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 127 | 22.89 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 139 | 22.91 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 191 | 22.99 | humidity | 80.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 199 | 22.99 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 208 | 23.01 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 273 | 23.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 281 | 23.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 297 | 23.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 303 | 23.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 313 | 23.10 | humidity | 80.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 314 | 23.10 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 3 | NA |
| 315 | 23.10 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 3 | NA |
| 316 | 23.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 320 | 23.10 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 3 | NA |
| 322 | 23.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 348 | 23.12 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 388 | 23.15 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 419 | 23.17 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 420 | 23.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 432 | 23.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 437 | 23.18 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 453 | 23.19 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 455 | 23.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 465 | 23.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 473 | 23.20 | humidity | 70.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 480 | 23.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 514 | 23.22 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 524 | 23.23 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 527 | 23.23 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 548 | 23.24 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 603 | 23.27 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 623 | 23.28 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 625 | 23.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 687 | 23.31 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 688 | 23.31 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 698 | 23.32 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 839 | 23.37 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 3 | NA |
| 843 | 23.37 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 892 | 23.39 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |