Os03g0351800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0351800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.2 | 0.245 | 12.6 | 0.84 | 1.24 | 0.858 | -0.257 | 0.378 | 0.42 | 5.11 | 46.29 | 275 | -- | -- |
| 27.41 | 0.244 | 12.6 | 0.844 | 1.23 | 0.856 | -0.0858 | -- | 0.422 | 5.13 | 44.64 | 275 | -- | -- |
| 27.33 | 0.243 | 12.6 | 0.843 | 1.24 | 0.857 | -- | 0.239 | 0.417 | 5.11 | 46.29 | 275 | -- | -- |
| 27.43 | 0.244 | 12.6 | 0.844 | 1.24 | 0.854 | -- | -- | 0.423 | 5.12 | 44.76 | 275 | -- | -- |
| 30.62 | 0.258 | 12.6 | 0.865 | -- | 1.79 | -- | 0.0437 | 0.463 | -- | 5.803 | 541 | -- | -- |
| 35.66 | 0.28 | 12.6 | 0.8 | 1.71 | -- | -0.0253 | -- | 0.36 | 4.32 | -- | -- | -- | -- |
| 35.66 | 0.28 | 12.6 | 0.8 | 1.71 | -- | -- | -- | 0.36 | 4.32 | -- | -- | -- | -- |
| 30.6 | 0.258 | 12.6 | 0.858 | -- | 1.81 | -- | -- | 0.462 | -- | 5.82 | 544 | -- | -- |
| 45.9 | 0.316 | 12.7 | -- | 1.32 | 0.744 | -- | -- | 0.321 | 4.96 | 94.69 | 270 | -- | -- |
| 192.42 | 0.648 | 12.7 | 0.868 | -- | -- | -- | -- | 0.406 | -- | -- | -- | -- | -- |
| 52.54 | 0.339 | 12.7 | -- | 1.72 | -- | -- | -- | 0.271 | 4.31 | -- | -- | -- | -- |
| 48.49 | 0.324 | 12.7 | -- | -- | 1.84 | -- | -- | 0.376 | -- | 9.763 | 534 | -- | -- |
| 212.29 | 0.68 | 12.7 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.40 | radiation | 1 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 3 | 25.66 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 4 | 25.74 | radiation | 40 | 270 | > th | dose independent | rect. | 12 | 22 |
| 10 | 25.97 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 11 |
| 16 | 26.19 | humidity | 70 | 270 | > th | dose dependent | rect. | 8 | 12 |
| 30 | 26.40 | radiation | 40 | 270 | < th | dose dependent | sin | 21 | NA |
| 33 | 26.42 | radiation | 1 | 270 | > th | dose dependent | sin | 20 | NA |
| 37 | 26.45 | radiation | 20 | 270 | > th | dose independent | rect. | 12 | 22 |
| 41 | 26.49 | radiation | 40 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 48 | 26.53 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 13 |
| 58 | 26.61 | radiation | 40 | 270 | > th | dose independent | sin | 13 | NA |
| 67 | 26.68 | radiation | 30 | 270 | > th | dose independent | sin | 18 | NA |
| 78 | 26.74 | radiation | 40 | 270 | > th | dose independent | sin | 16 | NA |
| 80 | 26.75 | humidity | 70 | 270 | < th | dose independent | rect. | 10 | 7 |
| 86 | 26.77 | humidity | 80 | 30 | < th | dose independent | rect. | 12 | 6 |
| 116 | 26.91 | humidity | 70 | 270 | > th | dose independent | sin | 22 | NA |
| 125 | 26.94 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 142 | 27.02 | radiation | 1 | 90 | > th | dose dependent | sin | 14 | NA |
| 143 | 27.03 | radiation | 40 | 270 | < th | dose independent | sin | 16 | NA |
| 158 | 27.08 | radiation | 20 | 90 | < th | dose dependent | sin | 16 | NA |
| 160 | 27.09 | radiation | 30 | 270 | < th | dose independent | sin | 18 | NA |
| 164 | 27.10 | radiation | 40 | 270 | > th | dose independent | rect. | 12 | 3 |
| 223 | 27.22 | radiation | 30 | 270 | > th | dose dependent | sin | 13 | NA |
| 225 | 27.23 | humidity | 70 | 90 | > th | dose dependent | sin | 21 | NA |
| 251 | 27.31 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 262 | 27.35 | humidity | 90 | 30 | < th | dose dependent | rect. | 12 | 6 |
| 270 | 27.37 | humidity | 70 | 270 | < th | dose independent | rect. | 12 | 3 |
| 296 | 27.42 | radiation | 30 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 297 | 27.42 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 332 | 27.43 | humidity | 90 | 270 | < th | dose dependent | rect. | 12 | 3 |
| 335 | 27.43 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 350 | 27.44 | radiation | 10 | 90 | > th | dose independent | sin | 14 | NA |
| 353 | 27.44 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 431 | 27.47 | humidity | 70 | 270 | > th | dose independent | rect. | 24 | 23 |
| 569 | 27.59 | radiation | 1 | 30 | > th | dose independent | sin | 17 | NA |
| 582 | 27.62 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 5 |
| 595 | 27.65 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 23 |
| 605 | 27.67 | radiation | 30 | 270 | > th | dose independent | rect. | 9 | 7 |
| 629 | 27.69 | radiation | 1 | 30 | < th | dose independent | sin | 17 | NA |
| 640 | 27.70 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 669 | 27.74 | radiation | 40 | 270 | < th | dose independent | rect. | 16 | 23 |
| 699 | 27.78 | humidity | 80 | 30 | < th | dose independent | rect. | 14 | 4 |
| 838 | 27.83 | humidity | 70 | 270 | < th | dose independent | sin | 22 | NA |
| 886 | 27.85 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 887 | 27.85 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 898 | 27.86 | radiation | 10 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 920 | 27.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 3 |
| 945 | 27.91 | radiation | 20 | 270 | < th | dose independent | rect. | 16 | 22 |
| 970 | 27.93 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 6 |