Os08g0487500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os08g0487500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.75 | 0.224 | 11.3 | 0.329 | 0.445 | -0.566 | -0.835 | -0.569 | 0.113 | 9.66 | 25.11 | 1490 | -- | -- |
| 23.02 | 0.223 | 11.3 | 0.217 | 0.445 | -0.507 | -0.831 | -- | 0.0904 | 9.56 | 25.82 | 1635 | -- | -- |
| 25.35 | 0.235 | 11.3 | 0.316 | 0.453 | -0.56 | -- | -0.611 | 0.118 | 9.77 | 25.2 | 1404 | -- | -- |
| 25.62 | 0.236 | 11.3 | 0.189 | 0.449 | -0.52 | -- | -- | 0.084 | 9.63 | 25.8 | 1628 | -- | -- |
| 36.02 | 0.281 | 11.4 | 0.195 | -- | -0.527 | -- | 0.202 | 0.0876 | -- | 25.2 | 1404 | -- | -- |
| 26.64 | 0.242 | 11.3 | 0.383 | 0.445 | -- | -0.857 | -- | 0.2 | 9.55 | -- | -- | -- | -- |
| 29.36 | 0.254 | 11.3 | 0.351 | 0.448 | -- | -- | -- | 0.199 | 9.61 | -- | -- | -- | -- |
| 36.09 | 0.281 | 11.4 | 0.226 | -- | -0.541 | -- | -- | 0.0941 | -- | 25.2 | 1570 | -- | -- |
| 26.24 | 0.239 | 11.4 | -- | 0.444 | -0.518 | -- | -- | 0.0543 | 9.74 | 25.1 | 2995 | -- | -- |
| 41.24 | 0.3 | 11.3 | 0.347 | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
| 32.61 | 0.267 | 11.3 | -- | 0.447 | -- | -- | -- | 0.16 | 9.55 | -- | -- | -- | -- |
| 37.34 | 0.286 | 11.4 | -- | -- | -0.614 | -- | -- | 0.0584 | -- | 25.1 | 1581 | -- | -- |
| 44.42 | 0.311 | 11.3 | -- | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.12 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 5 | 21.55 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 11 |
| 16 | 21.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 17 | 21.98 | temperature | 20 | 90 | > th | dose dependent | sin | 16 | NA |
| 19 | 22.00 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 21 | 22.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 22 | 22.03 | temperature | 15 | 10 | > th | dose dependent | sin | 16 | NA |
| 25 | 22.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 29 | 22.05 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 8 |
| 32 | 22.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 39 | 22.09 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 45 | 22.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 46 | 22.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 65 | 22.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 78 | 22.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 85 | 22.16 | temperature | 25 | 270 | < th | dose dependent | sin | 19 | NA |
| 116 | 22.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 20 |
| 129 | 22.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 22 |
| 134 | 22.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 159 | 22.31 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 172 | 22.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 14 |
| 173 | 22.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 17 |
| 183 | 22.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 185 | 22.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 192 | 22.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 203 | 22.35 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 207 | 22.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 238 | 22.37 | temperature | 30 | 10 | < th | dose dependent | sin | 16 | NA |
| 393 | 22.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 15 |
| 402 | 22.50 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 21 |
| 436 | 22.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 510 | 22.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 515 | 22.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 521 | 22.56 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 523 | 22.56 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 574 | 22.58 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 19 |
| 575 | 22.58 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 21 |
| 630 | 22.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 648 | 22.62 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 22 |
| 731 | 22.65 | temperature | 20 | 10 | < th | dose independent | rect. | 13 | 16 |
| 747 | 22.66 | temperature | 25 | 270 | < th | dose independent | sin | 19 | NA |
| 910 | 22.72 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 14 |