BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0487500 Os08g0487500|AK066326
(271 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0487500 Zinc finger, RING-type domain containing protein 433 e-122
Os02g0727700 Zinc finger, RING-type domain containing protein 101 6e-22
Os10g0487400 Zinc finger, RING-type domain containing protein 90 2e-18
Os06g0633500 Zinc finger, RING-type domain containing protein 84 2e-16
Os12g0118700 Zinc finger, RING-type domain containing protein 80 1e-15
Os11g0119200 Zinc finger, RING-type domain containing protein 79 3e-15
Os06g0101300 Zinc finger, RING-type domain containing protein 79 5e-15
Os05g0110000 Zinc finger, RING-type domain containing protein 74 8e-14
Os05g0488800 Zinc finger, RING-type domain containing protein 73 2e-13
Os03g0812200 Zinc finger, RING-type domain containing protein 68 7e-12
Os03g0351800 Zinc finger, RING-type domain containing protein 67 9e-12
Os01g0276600 Zinc finger, RING-type domain containing protein 67 1e-11
Os01g0972000 Zinc finger, RING-type domain containing protein 67 2e-11
Os03g0324900 Zinc finger, RING-type domain containing protein 66 3e-11
Os08g0464400 Zinc finger, RING-type domain containing protein 65 4e-11
Os03g0271600 Zinc finger, RING-type domain containing protein 65 7e-11
Os02g0191500 Similar to Goliath homolog precursor (RING fin... 64 8e-11
>Os08g0487500 Zinc finger, RING-type domain containing protein
Length = 271
Score = 433 bits (1113), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/271 (82%), Positives = 224/271 (82%)
Query: 1 MASSSLLVRLASDEMPQTLDASSSSSCYDAFVPVFHPDPSSGFXXXXXXXXXDRLRSQFL 60
MASSSLLVRLASDEMPQTLDASSSSSCYDAFVPVFHPDPSSGF DRLRSQFL
Sbjct: 1 MASSSLLVRLASDEMPQTLDASSSSSCYDAFVPVFHPDPSSGFSAASVVAAADRLRSQFL 60
Query: 61 SVEPDLFHDALVAPSPDHLGFPDXXXXXXIRWDCLQLXXXXXXXXGVADLRLEASNAAEE 120
SVEPDLFHDALVAPSPDHLGFPD IRWDCLQL GVADLRLEASNAAEE
Sbjct: 61 SVEPDLFHDALVAPSPDHLGFPDEEEEEEIRWDCLQLDDDDEEEEGVADLRLEASNAAEE 120
Query: 121 FDWEEVASPSGGAGMDQPEPEWEVLADVXXXXXXXADEGFVYTSDRDVYEVLVGEGLFLK 180
FDWEEVASPSGGAGMDQPEPEWEVLADV ADEGFVYTSDRDVYEVLVGEGLFLK
Sbjct: 121 FDWEEVASPSGGAGMDQPEPEWEVLADVPPPPPPPADEGFVYTSDRDVYEVLVGEGLFLK 180
Query: 181 SKPPAARSAVEALPSXXXXXXXXXXXXXXXXXRDGVAAGERVKRLPCSHGYHEECIMPWL 240
SKPPAARSAVEALPS RDGVAAGERVKRLPCSHGYHEECIMPWL
Sbjct: 181 SKPPAARSAVEALPSAVVAAGEDGEGEECAVCRDGVAAGERVKRLPCSHGYHEECIMPWL 240
Query: 241 DVRNSCPLCRFELPTDDPQYESWKASRAAAA 271
DVRNSCPLCRFELPTDDPQYESWKASRAAAA
Sbjct: 241 DVRNSCPLCRFELPTDDPQYESWKASRAAAA 271
>Os02g0727700 Zinc finger, RING-type domain containing protein
Length = 311
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 95/197 (48%), Gaps = 27/197 (13%)
Query: 92 WDCLQLXXXXXXXXGVADLRLEASNAAEEFDWEEVASPSGGAGMDQPEP----EWEVLAD 147
WDCLQL + N +WE+V + EWEVL
Sbjct: 107 WDCLQLEEPDHQRWDIG------VNGGGGDEWEQVGIRVEEEEEEAAAAVRSLEWEVLLA 160
Query: 148 VXXXXXXXADEGFVYTSDRDVY------EVLVGEGLFLKSKPPAARSA-------VEALP 194
D G Y D + +VL G+ L + +PPAA+ A VE+LP
Sbjct: 161 TNSLGSLVVD-GADYDGGIDTFFLDDADDVLFGQ-LAAEHEPPAAKGARAAAKAAVESLP 218
Query: 195 SXXXXXXXXXXXXXXXXXRDGVAAGERVKRLPCSHGYHEECIMPWLDVRNSCPLCRFELP 254
+ +DG+ AGER +RLPC+H YH+ CI+PWL +RN+CPLCR ELP
Sbjct: 219 TVVVDAARGDTQCAVC--KDGMEAGERARRLPCAHLYHDGCILPWLAIRNTCPLCRHELP 276
Query: 255 TDDPQYESWKASRAAAA 271
TDDP+YE+WKA RAAA
Sbjct: 277 TDDPEYENWKARRAAAG 293
>Os10g0487400 Zinc finger, RING-type domain containing protein
Length = 304
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 183 PPAARSAVEALPSXXXXXXXXXXXXXXXXX--RDGVAAGERVKRLPCSHGYHEECIMPWL 240
PPAA+SA+ LP ++ + GE K++PC H YH +CIMPWL
Sbjct: 142 PPAAKSALSTLPDVVVTDAMVAAADGAECAVCKEDFSPGEGAKQMPCKHIYHADCIMPWL 201
Query: 241 DVRNSCPLCRFELPTDDPQYESWKASR 267
D+ NSCP+CRFELPTDDP YE K S
Sbjct: 202 DLHNSCPICRFELPTDDPDYEGRKKSN 228
>Os06g0633500 Zinc finger, RING-type domain containing protein
Length = 124
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 213 RDGVAAGERVKRLPCSHGYHEECIMPWLDVRNSCPLCRFELPTDDPQYESWKASRAAAA 271
+DG+A GE +LPC+H YH CI PWL +RNSCP+CR+ELPTDDP+YE + R ++
Sbjct: 54 KDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRRSSG 112
>Os12g0118700 Zinc finger, RING-type domain containing protein
Length = 499
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 180 KSKPPAARSAVEALPSXXXXXXXXXXXXXXX-XXRDGVAAGERVKRLPCSHGYHEECIMP 238
+ PPAA S +E LPS +D + R K+LPC H YH CI+P
Sbjct: 304 RGAPPAATSFIENLPSVIISASHQTNGDVICPVCKDPIPTRARAKQLPCMHLYHSSCILP 363
Query: 239 WLDVRNSCPLCRFELPTDDPQYESWK 264
WL RN+CP+CR+ELPTDD +YE K
Sbjct: 364 WLSSRNTCPVCRYELPTDDAEYERSK 389
>Os11g0119200 Zinc finger, RING-type domain containing protein
Length = 491
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 180 KSKPPAARSAVEALPSXXXXXXXXXXXXXXX-XXRDGVAAGERVKRLPCSHGYHEECIMP 238
+ PPAA S +E LPS +D + R K+LPC H YH CI+P
Sbjct: 296 RGAPPAATSFIENLPSVIISTSHQINDDVICPVCKDPIPTRARAKQLPCMHLYHSSCILP 355
Query: 239 WLDVRNSCPLCRFELPTDDPQYESWK 264
W RN+CP+CR+ELPTDD +YE K
Sbjct: 356 WFSSRNTCPVCRYELPTDDAEYERSK 381
>Os06g0101300 Zinc finger, RING-type domain containing protein
Length = 338
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 181 SKPPAARSAVEALP--SXXXXXXXXXXXXXXXXXRDGVAAGERVKRLPCSHGYHEECIMP 238
PPAA+SAV ALP + D G K+LPC H +H++CI+P
Sbjct: 172 GTPPAAKSAVAALPDVAVSADMMAADGGAQCAVCMDDFHLGAAAKQLPCKHVFHKDCILP 231
Query: 239 WLDVRNSCPLCRFELPTDDPQY 260
WLD+ +SCP+CRFELPTDDP +
Sbjct: 232 WLDLHSSCPVCRFELPTDDPHH 253
>Os05g0110000 Zinc finger, RING-type domain containing protein
Length = 333
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 180 KSKPPAARSAVEALPSXXXXXXXXXXXXXXXXXRDGVAAGERVKRLPCSHGYHEECIMPW 239
+ PPA++++VE++P+ ++ G+ + +PCSH YH++CI+PW
Sbjct: 114 RENPPASKASVESMPTVTIAASHVGADSHCAVCKEPFELGDEAREMPCSHIYHQDCILPW 173
Query: 240 LDVRNSCPLCRFELPTD 256
L +RNSCP+CR E+PTD
Sbjct: 174 LALRNSCPVCRHEMPTD 190
>Os05g0488800 Zinc finger, RING-type domain containing protein
Length = 323
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 156 ADEGFVYTSDRDVYEVLVGEGLFL------------KSKPPAARSAVEALPSXXXXXXXX 203
D+G D + E ++G GL L PPA + AVEALP+
Sbjct: 139 GDQGGSTNDDGLLEEYVLGAGLSLLLQHLAESDPSRNGTPPAKKEAVEALPTVKIEEVVS 198
Query: 204 XXXXXXXXXRDGVAAGERVKRLPCSHGYHEECIMPWLDVRNSCPLCRFELPTDDPQ 259
D + G + K++PC H +H CI+PWL++ +SCP+CRFELP+++ +
Sbjct: 199 CSVCL-----DDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFELPSEETK 249
>Os03g0812200 Zinc finger, RING-type domain containing protein
Length = 369
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 177 LFLKSKPPAARSAVEALPSXXXXXXXXXXXXXXXXXRDGVAAGERVKRLPCSHGYHEECI 236
L PPA + AVEALP+ + G K +PC H +H +CI
Sbjct: 228 LNRSGTPPAKKEAVEALPTVNIQEVLGCSVCL-----EDFEMGTEAKEMPCQHKFHSQCI 282
Query: 237 MPWLDVRNSCPLCRFELPTDDPQ 259
+PWL++ +SCP+CRF+LPT++ +
Sbjct: 283 LPWLELHSSCPICRFQLPTEESK 305
>Os03g0351800 Zinc finger, RING-type domain containing protein
Length = 283
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 180 KSKPPAARSAVEALPSXXXXXXXXXXXXXXXXXRDGVAAGERVKRLPCSHGYHEECIMPW 239
+ PPA +S+++A+P+ +D G + +PC H YH +CI+PW
Sbjct: 158 RGPPPATQSSIDAMPTVKITQRHLSGDSHCPVCKDKFELGSEAREMPCKHLYHSDCIVPW 217
Query: 240 LDVRNSCPLCRFELP 254
L+ NSCP+CR+ELP
Sbjct: 218 LEQHNSCPVCRYELP 232
>Os01g0276600 Zinc finger, RING-type domain containing protein
Length = 329
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 184 PAARSAVEALPSXXXXXXXXXXXXXXXXXRDGVAAGERVKRLPCSHGYHEECIMPWLDVR 243
PA + AVE++P+ D AAGER +PC H +H +CI+PWL +
Sbjct: 189 PAKKEAVESMPTVEVAAGGDCDSACAVCLED-YAAGERATEMPCRHRFHAKCIVPWLKMH 247
Query: 244 NSCPLCRFELPTDDPQYESWKASRAAAA 271
+SCP+CRF+LPTDD S K++R AA
Sbjct: 248 SSCPVCRFQLPTDDDDDSS-KSARGGAA 274
>Os01g0972000 Zinc finger, RING-type domain containing protein
Length = 334
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 182 KPPAARSAVEALPSXXXXXXXXXXXXXXXXXRDGVAAGERVKRLPCSHGYHEECIMPWLD 241
PPA+++AV+++P+ ++ + +PC+H YH CI+PWL
Sbjct: 104 NPPASKAAVDSMPTILIGACHLAADSHCAVCKEPFHLAAEAREMPCAHIYHHNCILPWLA 163
Query: 242 VRNSCPLCRFELPTDD 257
+ NSCP+CR +PTDD
Sbjct: 164 LHNSCPVCRHRMPTDD 179
>Os03g0324900 Zinc finger, RING-type domain containing protein
Length = 320
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 180 KSKPPAARSAVEALPSXXXXXXXXXXXXXXXXXRDGVAAGERVKRLPCSHGYHEECIMPW 239
+ PPA + AV ALP+ D AG + +PC H +H+ CI+PW
Sbjct: 186 QGTPPARKEAVAALPTVRVHDAAGATCPVCL---DEFEAGGEAREMPCKHRFHDGCILPW 242
Query: 240 LDVRNSCPLCRFELPTDD 257
L+ +SCP+CR++LPTDD
Sbjct: 243 LEAHSSCPVCRYQLPTDD 260
>Os08g0464400 Zinc finger, RING-type domain containing protein
Length = 211
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 223 KRLPCSHGYHEECIMPWLDVRNSCPLCRFELPTDDPQ 259
+RLPC H YH ECI+ WL++RNSCP+CR LP+D+PQ
Sbjct: 88 RRLPCGHLYHSECIVQWLEMRNSCPVCRSRLPSDEPQ 124
>Os03g0271600 Zinc finger, RING-type domain containing protein
Length = 279
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 182 KPPAARSAVEALPSXXXXXXXXXXXXXXXXXRDGVAAGERVKRLPCSHGYHEECIMPWLD 241
+PPA+++AVE++PS G +A + +PC H YH++CI+PWL
Sbjct: 112 RPPASKAAVESMPSVTVAGSGAHCAVCQEAFEPGASA----REMPCKHVYHQDCILPWLS 167
Query: 242 VRNSCPLCRFEL 253
+RNSCP+CR EL
Sbjct: 168 LRNSCPVCRREL 179
>Os02g0191500 Similar to Goliath homolog precursor (RING finger protein 130)
Length = 375
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 213 RDGVAAGERVKRLPCSHGYHEECIMPWLDVRNSCPLCRFELPTDDPQYESWKASR 267
+D A+G+ V LPC H +H +CI PWL +R +CP+CR ++ T+D YE A R
Sbjct: 279 KDSFASGQIVALLPCKHYFHGDCIWPWLTIRTTCPVCRHQVRTEDDDYEQRMARR 333
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,068,806
Number of extensions: 319077
Number of successful extensions: 1042
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 20
Length of query: 271
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 172
Effective length of database: 11,866,615
Effective search space: 2041057780
Effective search space used: 2041057780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)