Os01g0276600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os01g0276600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.75 | 0.384 | 9.72 | -0.0813 | 1.09 | -0.617 | 0.818 | 1.28 | 0.302 | 23.8 | 25 | 741 | -- | -- |
| 68.38 | 0.385 | 9.68 | 0.282 | 1.15 | -0.535 | 0.608 | -- | 0.414 | 24 | 24.7 | 575 | -- | -- |
| 69.18 | 0.387 | 9.72 | 0.0206 | 1.1 | -0.615 | -- | 0.743 | 0.315 | 0.000289 | 24.85 | 691 | -- | -- |
| 69.58 | 0.389 | 9.69 | 0.257 | 1.17 | -0.529 | -- | -- | 0.406 | 0.00369 | 24.63 | 574 | -- | -- |
| 127.65 | 0.526 | 9.76 | -0.355 | -- | -1.24 | -- | 1.61 | 0.0685 | -- | 25.01 | 835 | -- | -- |
| 79.73 | 0.419 | 9.64 | 0.451 | 1.31 | -- | 0.531 | -- | 0.625 | 23.4 | -- | -- | -- | -- |
| 80.94 | 0.421 | 9.64 | 0.429 | 1.31 | -- | -- | -- | 0.623 | 23.4 | -- | -- | -- | -- |
| 131.18 | 0.533 | 9.71 | 0.11 | -- | -1.18 | -- | -- | 0.21 | -- | 25.3 | 844 | -- | -- |
| 71.06 | 0.393 | 9.69 | -- | 1.18 | -0.576 | -- | -- | 0.369 | 23.9 | 24.38 | 550 | -- | -- |
| 188.85 | 0.642 | 9.61 | 0.464 | -- | -- | -- | -- | 0.636 | -- | -- | -- | -- | -- |
| 85.8 | 0.433 | 9.66 | -- | 1.32 | -- | -- | -- | 0.575 | 23.4 | -- | -- | -- | -- |
| 131.43 | 0.534 | 9.71 | -- | -- | -1.21 | -- | -- | 0.192 | -- | 25.3 | 851 | -- | -- |
| 194.51 | 0.651 | 9.63 | -- | -- | -- | -- | -- | 0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.43 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 4 | 58.84 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 14 | 15 |
| 21 | 59.97 | temperature | 20.0 | 30 | > th | dose independent | rect. | 14 | 15 |
| 23 | 60.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 17 |
| 34 | 60.80 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 7 |
| 50 | 61.51 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 7 |
| 69 | 62.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 17 |
| 73 | 62.17 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 77 | 62.24 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 79 | 62.28 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 5 |
| 81 | 62.34 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 7 |
| 92 | 62.56 | radiation | 10.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 93 | 62.58 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 112 | 62.94 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 113 | 62.95 | temperature | 20.0 | 30 | > th | dose independent | rect. | 24 | 5 |
| 122 | 63.04 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 3 |
| 126 | 63.07 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 14 | 15 |
| 127 | 63.07 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 130 | 63.09 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 131 | 63.10 | temperature | 25.0 | 720 | > th | dose independent | rect. | 14 | 12 |
| 153 | 63.30 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 20 |
| 155 | 63.32 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 156 | 63.33 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 157 | 63.33 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 10 |
| 171 | 63.41 | temperature | 25.0 | 720 | > th | dose independent | sin | 16 | NA |
| 173 | 63.41 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 18 |
| 174 | 63.41 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 176 | 63.42 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 8 |
| 190 | 63.46 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 209 | 63.59 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 22 | 7 |
| 211 | 63.60 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 212 | 63.60 | wind | 7.0 | 90 | < th | dose independent | rect. | 14 | 15 |
| 217 | 63.62 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 14 | 15 |
| 219 | 63.63 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 5 |
| 232 | 63.70 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 9 |
| 235 | 63.70 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 9 |
| 236 | 63.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 20 |
| 255 | 63.84 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 10 |
| 257 | 63.84 | temperature | 25.0 | 720 | < th | dose independent | rect. | 12 | 14 |
| 266 | 63.89 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 6 |
| 272 | 63.89 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 274 | 63.90 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 279 | 63.91 | temperature | 25.0 | 720 | < th | dose independent | sin | 16 | NA |
| 294 | 63.96 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 10 |
| 302 | 63.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 309 | 63.97 | radiation | 1.0 | 270 | < th | dose dependent | sin | 21 | NA |
| 315 | 63.99 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 9 |
| 316 | 63.99 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 9 |
| 317 | 63.99 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 9 |
| 336 | 64.02 | radiation | 1.0 | 270 | < th | dose independent | rect. | 9 | 14 |
| 338 | 64.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 339 | 64.03 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 343 | 64.03 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 9 | 14 |
| 345 | 64.04 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 19 |
| 348 | 64.05 | radiation | 1.0 | 270 | < th | dose independent | rect. | 13 | 10 |
| 357 | 64.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 16 |
| 365 | 64.06 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 13 | 10 |
| 391 | 64.13 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 24 | 3 |
| 393 | 64.14 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 10 |
| 408 | 64.19 | radiation | 1.0 | 30 | < th | dose independent | sin | 3 | NA |
| 409 | 64.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 412 | 64.20 | radiation | 1.0 | 30 | > th | dose independent | sin | 3 | NA |
| 419 | 64.22 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 9 |
| 441 | 64.27 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 484 | 64.41 | radiation | 1.0 | 270 | > th | dose independent | sin | 21 | NA |
| 490 | 64.43 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 17 |
| 493 | 64.43 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 510 | 64.48 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 535 | 64.52 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 14 | 15 |
| 539 | 64.52 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 14 | 15 |
| 552 | 64.56 | wind | 9.0 | 270 | < th | dose dependent | rect. | 24 | 3 |
| 565 | 64.61 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 575 | 64.66 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 587 | 64.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 16 |
| 588 | 64.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 601 | 64.74 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 4 |
| 650 | 64.85 | wind | 3.0 | 90 | < th | dose independent | rect. | 24 | 5 |
| 655 | 64.86 | radiation | 1.0 | 270 | < th | dose independent | sin | 21 | NA |
| 661 | 64.87 | wind | 3.0 | 270 | < th | dose independent | rect. | 24 | 3 |
| 674 | 64.89 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 676 | 64.90 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 697 | 64.92 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 699 | 64.92 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 700 | 64.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 703 | 64.92 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 712 | 64.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 18 |
| 715 | 64.94 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 733 | 64.95 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 753 | 64.99 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 777 | 65.03 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 5 |
| 793 | 65.07 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 24 | 5 |
| 797 | 65.07 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 10 |
| 801 | 65.07 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 825 | 65.10 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 3 |
| 826 | 65.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 3 |
| 828 | 65.10 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 3 |
| 829 | 65.10 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 3 |
| 832 | 65.10 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 3 |
| 833 | 65.10 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 3 |
| 845 | 65.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 21 |
| 858 | 65.12 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 872 | 65.14 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 3 |
| 876 | 65.14 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 896 | 65.17 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 3 |
| 898 | 65.17 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 901 | 65.17 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 902 | 65.17 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 3 |
| 908 | 65.17 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 21 |
| 909 | 65.17 | wind | 9.0 | 30 | < th | dose dependent | rect. | 2 | 3 |
| 910 | 65.17 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 24 | 3 |
| 938 | 65.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 8 |
| 941 | 65.20 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 18 |
| 944 | 65.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 945 | 65.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 3 |
| 960 | 65.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 3 |