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Os05g0110000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0229) R2 : 0.705
β1 : 0.843 (0.0829) R2dD : 0.0693 R2D : 0.0615
β2 : 3.09 (0.101) R2dC : 2.03 R2C : -0.929
β3 : -2.42 (0.0904) R2dE : 1.54 R2E : -1.39
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.277 (0.0484) R2dN8 : 0.0284 R2N8 : 0.00365
σ : 0.423
deviance : 82.65
__
_____
C
peak time of C : 21.5
E
wheather : radiation
threshold : 1.407
memory length : 85
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.64
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81 0.423 11.5 0.837 3.08 -2.4 0.198 0.438 0.277 21.5 1.308 85 8.75 --
81.12 0.419 11.5 0.868 3.09 -2.41 0.647 -- 0.277 21.5 1.435 85 8.63 --
81.01 0.419 11.5 0.836 3.09 -2.4 -- 0.599 0.276 21.5 1.41 85 8.7 --
82.65 0.423 11.5 0.843 3.09 -2.42 -- -- 0.277 21.5 1.407 85 8.64 --
123.79 0.518 11.4 0.802 -- -2.45 -- -1.53 0.313 -- 0.2407 962 10 --
140.47 0.556 11.4 0.958 1.47 -- 0.556 -- 0.369 18.2 -- -- -- --
141.22 0.556 11.4 0.952 1.47 -- -- -- 0.371 18.2 -- -- -- --
124.63 0.52 11.4 0.754 -- -2.38 -- -- 0.291 -- 0.288 978 10.6 --
100.37 0.467 11.5 -- 3 -2.43 -- -- 0.22 21.6 0.1695 88 8.94 --
253.71 0.744 11.4 0.911 -- -- -- -- 0.339 -- -- -- -- --
165.1 0.601 11.4 -- 1.46 -- -- -- 0.265 18.2 -- -- -- --
136.67 0.544 11.4 -- -- -2.66 -- -- 0.172 -- 4.686e-06 1000 11.4 --
275.61 0.775 11.4 -- -- -- -- -- 0.238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.47 precipitation 0.1 270 < th dose independent rect. 17 19
2 72.47 precipitation 0.1 270 < th dose dependent rect. 17 19
5 72.92 wind 7.0 270 < th dose independent rect. 17 19
7 73.65 temperature 20.0 270 > th dose independent rect. 12 5
12 75.00 temperature 10.0 270 > th dose independent rect. 12 5
14 75.00 atmosphere 1015.0 270 < th dose independent rect. 12 5
15 75.00 temperature 10.0 270 > th dose independent rect. 17 19
16 75.00 humidity 50.0 270 > th dose dependent rect. 21 10
17 75.09 wind 1.0 270 > th dose independent rect. 12 5
19 75.38 precipitation 0.1 270 < th dose independent rect. 12 5
20 75.38 precipitation 0.1 270 < th dose dependent rect. 12 5
22 75.46 humidity 50.0 270 > th dose independent rect. 17 18
23 75.51 wind 9.0 270 < th dose independent rect. 12 5
29 75.72 precipitation 0.1 270 < th dose independent rect. 7 14
30 75.72 precipitation 0.1 270 < th dose dependent rect. 7 14
38 76.39 radiation 1.0 270 > th dose independent rect. 4 8
54 76.60 radiation 1.0 270 > th dose independent rect. 12 5
56 76.68 temperature 10.0 270 > th dose dependent rect. 12 5
58 76.79 humidity 90.0 270 < th dose independent rect. 12 5
59 77.04 atmosphere 995.0 270 > th dose independent rect. 17 19
64 77.42 wind 9.0 270 < th dose independent rect. 7 14
65 77.49 radiation 40.0 270 < th dose dependent rect. 21 10
74 77.65 humidity 70.0 270 > th dose independent rect. 21 10
76 77.69 radiation 20.0 270 < th dose independent rect. 21 10
77 77.72 radiation 1.0 270 > th dose independent rect. 7 4
79 77.79 temperature 10.0 270 > th dose independent rect. 21 10
80 77.79 temperature 30.0 270 < th dose independent rect. 21 10
81 77.79 humidity 50.0 270 > th dose independent rect. 21 10
83 77.79 atmosphere 995.0 270 > th dose independent rect. 21 10
85 77.79 temperature 10.0 270 > th dose independent rect. 7 14
89 77.93 wind 9.0 270 < th dose independent rect. 6 6
91 78.05 temperature 15.0 270 > th dose independent rect. 6 6
92 78.08 precipitation 0.1 270 < th dose independent rect. 6 6
93 78.08 precipitation 0.1 270 < th dose dependent rect. 6 6
95 78.14 wind 9.0 270 < th dose independent rect. 21 10
97 78.26 atmosphere 995.0 270 > th dose independent rect. 6 6
98 78.26 atmosphere 1015.0 270 < th dose independent rect. 6 6
99 78.26 temperature 10.0 270 > th dose independent rect. 12 18
102 78.43 temperature 15.0 270 > th dose independent rect. 7 4
115 78.60 wind 7.0 270 < th dose independent rect. 7 4
117 78.64 precipitation 0.1 270 < th dose independent rect. 7 4
119 78.64 precipitation 0.1 270 < th dose dependent rect. 7 4
126 78.81 atmosphere 995.0 270 > th dose independent rect. 12 5
128 78.82 atmosphere 995.0 270 > th dose independent rect. 7 4
129 78.82 atmosphere 1015.0 270 < th dose independent rect. 7 4
130 78.82 temperature 10.0 270 > th dose independent rect. 11 20
134 79.20 wind 9.0 270 < th dose independent rect. 12 18
143 79.52 humidity 50.0 270 > th dose independent rect. 7 4
151 79.83 radiation 20.0 270 < th dose independent rect. 16 10
160 80.14 radiation 1.0 90 > th dose independent rect. 13 17
168 80.19 wind 9.0 270 < th dose independent rect. 11 20
172 80.24 atmosphere 1015.0 270 < th dose independent rect. 7 14
180 80.46 humidity 50.0 270 > th dose independent rect. 13 2
201 80.98 humidity 50.0 270 > th dose independent rect. 6 6
204 81.03 humidity 50.0 270 > th dose independent rect. 12 4
219 81.35 precipitation 0.1 270 < th dose independent rect. 16 9
221 81.35 precipitation 0.1 270 < th dose dependent rect. 16 9
224 81.45 wind 9.0 270 < th dose independent rect. 16 9
225 81.50 radiation 40.0 270 < th dose dependent rect. 16 10
226 81.51 radiation 1.0 90 < th dose dependent sin 15 NA
233 81.62 wind 1.0 90 > th dose dependent rect. 13 6
238 81.74 precipitation 0.1 270 < th dose independent rect. 21 10
239 81.74 precipitation 0.1 270 < th dose dependent rect. 21 10
254 82.02 temperature 10.0 270 > th dose independent rect. 16 9
255 82.02 radiation 40.0 270 < th dose independent rect. 16 9
256 82.02 temperature 10.0 270 > th dose independent rect. 1 15
257 82.02 atmosphere 1015.0 270 < th dose independent rect. 1 15
260 82.05 wind 9.0 270 < th dose dependent rect. 7 4
269 82.17 wind 1.0 270 > th dose independent rect. 7 4
287 82.32 radiation 1.0 90 < th dose independent sin 15 NA
302 82.45 radiation 1.0 90 > th dose independent sin 15 NA
310 82.56 radiation 1.0 270 > th dose independent rect. 11 19
311 82.57 precipitation 0.1 270 < th dose independent rect. 12 18
312 82.57 precipitation 0.1 270 < th dose dependent rect. 12 18
320 82.72 temperature 10.0 270 > th dose dependent rect. 7 4
333 82.92 atmosphere 995.0 270 > th dose independent rect. 12 18
338 83.04 wind 1.0 270 > th dose dependent rect. 12 4
344 83.19 wind 9.0 270 < th dose dependent rect. 6 6
349 83.31 humidity 50.0 270 > th dose independent rect. 16 9
353 83.39 wind 9.0 270 < th dose independent rect. 1 15
382 83.74 precipitation 0.1 270 < th dose independent rect. 11 20
383 83.74 precipitation 0.1 270 < th dose dependent rect. 11 20
388 83.86 wind 1.0 270 > th dose independent rect. 6 6
437 84.56 atmosphere 1015.0 270 < th dose independent rect. 17 19
444 84.65 precipitation 0.1 270 < th dose independent rect. 1 15
445 84.65 precipitation 0.1 270 < th dose dependent rect. 1 15
448 84.69 atmosphere 995.0 270 > th dose independent rect. 11 20
463 84.91 radiation 40.0 30 < th dose independent rect. 12 7
467 84.99 temperature 30.0 270 < th dose independent rect. 17 18
479 85.14 wind 1.0 270 > th dose independent rect. 17 19
507 85.34 humidity 90.0 90 < th dose independent rect. 7 6
543 85.74 radiation 1.0 10 > th dose independent rect. 8 6
565 85.95 humidity 90.0 10 < th dose independent rect. 8 6
572 86.07 atmosphere 1015.0 270 < th dose independent rect. 22 9
579 86.13 wind 9.0 10 < th dose independent rect. 8 6
600 86.36 atmosphere 995.0 270 > th dose independent rect. 1 15
649 86.74 wind 1.0 270 > th dose independent rect. 16 9
657 86.78 temperature 10.0 10 > th dose independent rect. 8 6
661 86.78 atmosphere 995.0 10 > th dose independent rect. 8 6
662 86.78 atmosphere 1015.0 10 < th dose independent rect. 8 6
664 86.78 precipitation 0.1 10 < th dose independent rect. 8 6
665 86.78 temperature 10.0 10 > th dose independent rect. 14 18
668 86.78 precipitation 0.1 10 < th dose dependent rect. 8 6
680 86.83 radiation 40.0 10 < th dose independent rect. 14 18
682 86.87 radiation 40.0 30 < th dose independent rect. 12 20
684 86.89 temperature 30.0 270 < th dose independent rect. 7 4
695 87.03 atmosphere 995.0 270 > th dose independent rect. 16 9
746 87.50 atmosphere 1015.0 270 < th dose independent rect. 12 18
747 87.50 temperature 10.0 10 > th dose dependent rect. 8 6
757 87.61 temperature 10.0 270 > th dose dependent rect. 8 2
759 87.65 temperature 10.0 1440 > th dose independent rect. 14 5
763 87.65 temperature 10.0 1440 > th dose independent rect. 19 19
766 87.65 atmosphere 995.0 1440 > th dose independent rect. 19 19
767 87.66 wind 1.0 10 > th dose independent rect. 8 6
772 87.72 wind 9.0 10 < th dose independent rect. 14 18
790 87.95 atmosphere 1015.0 270 < th dose dependent rect. 13 3
795 88.00 atmosphere 1015.0 270 < th dose dependent rect. 12 5
901 88.76 atmosphere 995.0 270 > th dose independent rect. 7 15
909 88.80 temperature 10.0 10 > th dose dependent rect. 14 5
915 88.85 humidity 50.0 270 > th dose independent rect. 1 15
938 89.06 temperature 10.0 90 > th dose dependent rect. 19 18
966 89.18 atmosphere 1015.0 270 < th dose independent rect. 11 20