Os03g0271600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0271600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.62 | 0.223 | 12 | 0.464 | 0.567 | -0.189 | -0.0434 | -0.00415 | 0.239 | 3.37 | 90 | 141 | -- | -- |
| 22.43 | 0.221 | 12 | 0.467 | 0.56 | -0.189 | -0.00582 | -- | 0.234 | 3.18 | 86.75 | 218 | -- | -- |
| 22.62 | 0.222 | 12 | 0.466 | 0.568 | -0.187 | -- | 0.0125 | 0.239 | 3.36 | 89.43 | 146 | -- | -- |
| 22.43 | 0.221 | 12 | 0.459 | 0.558 | -0.192 | -- | -- | 0.232 | 3.17 | 86.36 | 218 | -- | -- |
| 33.49 | 0.27 | 12 | 0.602 | -- | -0.394 | -- | -0.0928 | 0.3 | -- | 83.44 | 236 | -- | -- |
| 24.26 | 0.231 | 12 | 0.492 | 0.703 | -- | 0.0658 | -- | 0.204 | 3.48 | -- | -- | -- | -- |
| 24.27 | 0.231 | 12 | 0.491 | 0.704 | -- | -- | -- | 0.203 | 3.47 | -- | -- | -- | -- |
| 31.99 | 0.263 | 12 | 0.537 | -- | -0.479 | -- | -- | 0.293 | -- | 81.86 | 243 | -- | -- |
| 27.9 | 0.246 | 12 | -- | 0.544 | -0.23 | -- | -- | 0.185 | 3.12 | 86 | 220 | -- | -- |
| 52.01 | 0.337 | 12 | 0.52 | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
| 30.62 | 0.259 | 12 | -- | 0.713 | -- | -- | -- | 0.149 | 3.47 | -- | -- | -- | -- |
| 37.32 | 0.285 | 12 | -- | -- | -0.5 | -- | -- | 0.172 | -- | 82.45 | 241 | -- | -- |
| 59.15 | 0.359 | 12 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.44 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 2 | 21.59 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 17 |
| 4 | 21.65 | radiation | 1.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 5 | 21.69 | humidity | 90.0 | 90 | < th | dose independent | rect. | 20 | 22 |
| 6 | 21.74 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 7 | 21.75 | humidity | 90.0 | 90 | < th | dose independent | rect. | 20 | 7 |
| 8 | 21.78 | radiation | 10.0 | 720 | > th | dose independent | rect. | 13 | 4 |
| 10 | 21.85 | radiation | 10.0 | 720 | > th | dose independent | rect. | 11 | 6 |
| 14 | 21.87 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 19 | 21.89 | radiation | 10.0 | 720 | > th | dose independent | rect. | 13 | 17 |
| 20 | 21.89 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 36 | 21.91 | radiation | 1.0 | 90 | < th | dose independent | sin | 0 | NA |
| 55 | 21.94 | radiation | 20.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 59 | 21.95 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 62 | 21.96 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 68 | 21.98 | humidity | 90.0 | 90 | < th | dose independent | rect. | 20 | 10 |
| 71 | 21.99 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 72 | 21.99 | temperature | 25.0 | 90 | > th | dose independent | rect. | 20 | 7 |
| 73 | 21.99 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 76 | 22.01 | radiation | 10.0 | 720 | > th | dose independent | sin | 16 | NA |
| 77 | 22.01 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 94 | 22.02 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 98 | 22.02 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 99 | 22.03 | radiation | 1.0 | 90 | > th | dose independent | sin | 0 | NA |
| 107 | 22.04 | humidity | 60.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 118 | 22.06 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 130 | 22.08 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 133 | 22.08 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 137 | 22.08 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 143 | 22.08 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 144 | 22.08 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 164 | 22.08 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 17 |
| 179 | 22.09 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 181 | 22.09 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 189 | 22.11 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 4 |
| 192 | 22.11 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 198 | 22.12 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 17 |
| 227 | 22.14 | humidity | 60.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 231 | 22.15 | humidity | 90.0 | 90 | < th | dose independent | rect. | 20 | 19 |
| 238 | 22.15 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 259 | 22.19 | wind | 1.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 279 | 22.21 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 17 |
| 286 | 22.22 | humidity | 80.0 | 720 | < th | dose independent | rect. | 13 | 4 |
| 289 | 22.22 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 306 | 22.24 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 5 |
| 317 | 22.25 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 322 | 22.26 | temperature | 25.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 324 | 22.26 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 326 | 22.26 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 338 | 22.27 | wind | 9.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 359 | 22.28 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 364 | 22.28 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 367 | 22.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 5 |
| 369 | 22.28 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 376 | 22.29 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 17 |
| 394 | 22.30 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 397 | 22.30 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 398 | 22.30 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 401 | 22.30 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 402 | 22.30 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 407 | 22.30 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 410 | 22.30 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 17 |
| 413 | 22.30 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 7 |
| 419 | 22.30 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 432 | 22.31 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 7 |
| 436 | 22.31 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 2 |
| 438 | 22.31 | wind | 9.0 | 10 | < th | dose dependent | rect. | 20 | 7 |
| 439 | 22.31 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 7 |
| 456 | 22.32 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 458 | 22.32 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 461 | 22.32 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 466 | 22.32 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 10 |
| 469 | 22.32 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 478 | 22.32 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 486 | 22.33 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 494 | 22.33 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 549 | 22.34 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 551 | 22.34 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 569 | 22.34 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 571 | 22.34 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 1 | 16 |
| 580 | 22.34 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 581 | 22.34 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 598 | 22.34 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 8 | 12 |
| 634 | 22.35 | atmosphere | 995.0 | 14400 | > th | dose independent | no | NA | NA |
| 637 | 22.35 | atmosphere | 995.0 | 14400 | < th | dose independent | no | NA | NA |
| 653 | 22.35 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 663 | 22.35 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 18 |
| 692 | 22.35 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 2 | 21 |
| 693 | 22.35 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 4 | 21 |
| 721 | 22.35 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 23 | 22 |
| 744 | 22.35 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 752 | 22.35 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 797 | 22.35 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 799 | 22.35 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 10 | 10 |
| 855 | 22.36 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 857 | 22.36 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 863 | 22.36 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 869 | 22.36 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 15 |
| 873 | 22.36 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 981 | 22.36 | atmosphere | 1000.0 | 14400 | < th | dose dependent | no | NA | NA |