Os06g0101300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os06g0101300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.92 | 0.235 | 10.5 | 2.06 | 0.298 | -0.762 | -0.751 | 2.4 | 0.268 | 2.92 | 21.15 | 1619 | -- | -- |
| 28.84 | 0.25 | 10.6 | 1.69 | 0.369 | -0.885 | -0.705 | -- | 0.216 | 3.62 | 14.8 | 8094 | -- | -- |
| 26.69 | 0.241 | 10.5 | 2.04 | 0.298 | -0.759 | -- | 2.25 | 0.26 | 3.48 | 20.92 | 1627 | -- | -- |
| 30.01 | 0.255 | 10.6 | 1.62 | 0.374 | -0.836 | -- | -- | 0.197 | 3.6 | 14.87 | 8191 | -- | -- |
| 31.54 | 0.262 | 10.5 | 2.07 | -- | -0.805 | -- | 2.43 | 0.289 | -- | 21.41 | 1732 | -- | -- |
| 41.28 | 0.301 | 10.7 | 1.12 | 0.312 | -- | -0.758 | -- | -0.0761 | 3.24 | -- | -- | -- | -- |
| 42.95 | 0.307 | 10.6 | 1.13 | 0.32 | -- | -- | -- | -0.0721 | 3.93 | -- | -- | -- | -- |
| 35.87 | 0.279 | 10.6 | 1.59 | -- | -0.879 | -- | -- | 0.176 | -- | 2.144 | 7626 | -- | -- |
| 74.87 | 0.403 | 10.7 | -- | 0.363 | -0.332 | -- | -- | -0.155 | 3.27 | 13.34 | 951 | -- | -- |
| 48.54 | 0.326 | 10.6 | 1.14 | -- | -- | -- | -- | -0.0636 | -- | -- | -- | -- | -- |
| 76.67 | 0.41 | 10.7 | -- | 0.342 | -- | -- | -- | -0.198 | 3.89 | -- | -- | -- | -- |
| 77.61 | 0.41 | 10.7 | -- | -- | -0.453 | -- | -- | -0.128 | -- | 20.47 | 273 | -- | -- |
| 83.08 | 0.425 | 10.7 | -- | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 5 | 24.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 12 |
| 10 | 24.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 13 | 24.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 22 | 24.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 54 | 24.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 107 | 25.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 123 | 25.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 132 | 25.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 142 | 25.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 144 | 25.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 149 | 25.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 162 | 25.22 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 170 | 25.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 176 | 25.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 185 | 25.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 203 | 25.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 221 | 25.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 227 | 25.32 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 279 | 25.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 327 | 25.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 345 | 25.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 22 |
| 389 | 25.44 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 407 | 25.46 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 415 | 25.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 446 | 25.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 463 | 25.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 514 | 25.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 601 | 25.58 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 609 | 25.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 655 | 25.62 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 713 | 25.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 719 | 25.66 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 733 | 25.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 956 | 25.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 975 | 25.80 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |