BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0254300 Os01g0254300|011-008-H05
         (388 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0254300  Similar to Pectinesterase-1 precursor (EC 3.1....   417   e-117
Os06g0193200  Similar to Pectin methylesterase 8 (Fragment)       112   6e-25
Os08g0450100  Similar to Pectinesterase (EC 3.1.1.11) (Fragm...   108   7e-24
Os01g0788400  Similar to Pectinesterase (EC 3.1.1.11) (Fragm...   105   8e-23
Os07g0675100  Similar to Pectin methylesterase isoform alpha...    98   9e-21
Os01g0234300  Similar to Pectin methylesterase 8 (Fragment)        97   2e-20
Os02g0288100  Similar to Pectinesterase (EC 3.1.1.11) (Fragm...    94   2e-19
Os08g0450200  Similar to Pectin methylesterase (Fragment)          93   3e-19
Os01g0311800  Similar to Pectin methylesterase 8 (Fragment)        90   3e-18
Os09g0433700  Similar to Pectin methylesterase (Fragment)          88   1e-17
Os11g0172100                                                       88   1e-17
Os04g0458900  Similar to Pectin methylesterase-like protein        84   2e-16
Os07g0691100  Similar to Pectin methylesterase 6 (Fragment)        83   3e-16
Os03g0300500  Similar to Pectin methylesterase 6 (Fragment)        80   3e-15
Os02g0783000  Similar to Pectin methylesterase 5 (Fragment)        79   5e-15
Os01g0312500  Similar to Pectin methylesterase isoform alpha...    79   7e-15
Os01g0880300  Similar to Pectin methylesterase-like protein        75   6e-14
Os03g0399000  Pectinesterase family protein                        72   6e-13
Os04g0641200  Similar to Pectin methylesterase-like protein        69   5e-12
Os11g0192400  Virulence factor, pectin lyase fold family pro...    69   5e-12
>Os01g0254300 Similar to Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin
           methylesterase 1) (PE 1)
          Length = 388

 Score =  417 bits (1072), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/388 (60%), Positives = 234/388 (60%)

Query: 1   MASTGAXXXXXXFVLXXXXXXXXXXXVFSGCXXXXXXXXXXXXXXXXXXXCFNVTAFXXX 60
           MASTGA      FVL           VFSGC                   CFNVTAF   
Sbjct: 1   MASTGALLLLLLFVLACGGNGGAAAAVFSGCSFESQEEAEAFEAALLQQACFNVTAFGGG 60

Query: 61  XXXXXXXXXCVSRLDTARGGAGSGPVPVLRAAVRDTLGEXXXXXXXXXXXXXXXNHAREE 120
                    CVSRLDTARGGAGSGPVPVLRAAVRDTLGE               NHAREE
Sbjct: 61  GGGGGGEGGCVSRLDTARGGAGSGPVPVLRAAVRDTLGEAVGAVAAVAGLASLSNHAREE 120

Query: 121 MAVRDCVELVGYSVDELGWALDAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIHA 180
           MAVRDCVELVGYSVDELGWALDAM                                 IHA
Sbjct: 121 MAVRDCVELVGYSVDELGWALDAMADPDGGVAAAEEEDETEPETRRRRRRGARAEDDIHA 180

Query: 181 WLSAAMGNQGTCLDGFHGTDSRLLRRVESAVTQLTQLVSNLLAMHKKLRDIXXXXXXXXX 240
           WLSAAMGNQGTCLDGFHGTDSRLLRRVESAVTQLTQLVSNLLAMHKKLRDI         
Sbjct: 181 WLSAAMGNQGTCLDGFHGTDSRLLRRVESAVTQLTQLVSNLLAMHKKLRDITPQHQHQHH 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXSSDLPPWXXXXXXXXXXXXXATXXXXXXXXXXXKA 300
                                    SSDLPPW             AT           KA
Sbjct: 241 HHPGNNNNKNGTADGAAAGGDDTGPSSDLPPWVTDVVNDVEEEVTATRGRGRSSSSGRKA 300

Query: 301 MRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGE 360
           MRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGE
Sbjct: 301 MRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGE 360

Query: 361 GMGETVITGSRSMAAGWTTFRSATFGKF 388
           GMGETVITGSRSMAAGWTTFRSATFGKF
Sbjct: 361 GMGETVITGSRSMAAGWTTFRSATFGKF 388
>Os06g0193200 Similar to Pectin methylesterase 8 (Fragment)
          Length = 585

 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 65/84 (77%)

Query: 303 VDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGEGM 362
           V + VA+DGSG +RTV EAVA AP++S  R VI V+ G YEENVEV   KTNI +VG+G 
Sbjct: 272 VVITVAKDGSGNYRTVGEAVAAAPNNSAARTVIRVRAGTYEENVEVPPYKTNIALVGDGR 331

Query: 363 GETVITGSRSMAAGWTTFRSATFG 386
           G TVITGSRS A GWTTFRSATFG
Sbjct: 332 GATVITGSRSAADGWTTFRSATFG 355
>Os08g0450100 Similar to Pectinesterase (EC 3.1.1.11) (Fragment)
          Length = 557

 Score =  108 bits (270), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 67/84 (79%)

Query: 301 MRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGE 360
           M VD VVA+DGSG + TVS AV  AP+ S  RYVIYVK+GVY+E V+++KKK N+++VG+
Sbjct: 231 MPVDAVVAKDGSGNYTTVSAAVDAAPTESASRYVIYVKKGVYKETVDIKKKKWNLMLVGD 290

Query: 361 GMGETVITGSRSMAAGWTTFRSAT 384
           GMG TVI+G R+   G+TTFRSAT
Sbjct: 291 GMGVTVISGHRNYVDGYTTFRSAT 314
>Os01g0788400 Similar to Pectinesterase (EC 3.1.1.11) (Fragment)
          Length = 546

 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 67/86 (77%)

Query: 300 AMRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVG 359
           A++ DVVVA+DGSG++ T+ EAV  AP   + RYVIYVK+GVY+EN+EV K K  ++IVG
Sbjct: 230 AVQADVVVAKDGSGKYTTIKEAVDAAPDGGKSRYVIYVKKGVYKENLEVGKTKRVLMIVG 289

Query: 360 EGMGETVITGSRSMAAGWTTFRSATF 385
           +GM +TVITGSR++  G TTF SAT 
Sbjct: 290 DGMDQTVITGSRNVVDGSTTFNSATL 315
>Os07g0675100 Similar to Pectin methylesterase isoform alpha (EC 3.1.1.11)
           (Fragment)
          Length = 579

 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 63/82 (76%)

Query: 304 DVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGEGMG 363
           DVVVA+DGSG++ TVSEAVA AP++S  RYVIY+K G Y ENVEV  +KTNI+ VG+G  
Sbjct: 267 DVVVAKDGSGKFTTVSEAVAAAPNNSETRYVIYIKAGGYFENVEVGSEKTNIMFVGDGTW 326

Query: 364 ETVITGSRSMAAGWTTFRSATF 385
           +TVI  SR++    TTFRSAT 
Sbjct: 327 KTVIKASRNVVDNSTTFRSATL 348
>Os01g0234300 Similar to Pectin methylesterase 8 (Fragment)
          Length = 621

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 63/85 (74%)

Query: 301 MRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGE 360
           +  D+VVA+DG+G  R + +A+  AP HSRRR VIYVK GVY ENV++  KKTN+++VG+
Sbjct: 300 IEADMVVAKDGTGTHRKIRDAIKAAPEHSRRRVVIYVKAGVYTENVKIGSKKTNLMLVGD 359

Query: 361 GMGETVITGSRSMAAGWTTFRSATF 385
           G G+TV+ G RS+   +TTF +AT 
Sbjct: 360 GAGKTVVVGYRSVHDNYTTFHTATL 384
>Os02g0288100 Similar to Pectinesterase (EC 3.1.1.11) (Fragment)
          Length = 554

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 63/82 (76%)

Query: 304 DVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGEGMG 363
           D+VVA+DG+G  RT+S+AV  AP  S RR VI+VK G Y+ENV+V +KKTN+V VG+G G
Sbjct: 236 DMVVAKDGTGTHRTISDAVKAAPERSGRRTVIHVKAGRYDENVKVGRKKTNLVFVGDGKG 295

Query: 364 ETVITGSRSMAAGWTTFRSATF 385
            TV++  RS+A  +TTF +ATF
Sbjct: 296 VTVVSAGRSVADNFTTFHTATF 317
>Os08g0450200 Similar to Pectin methylesterase (Fragment)
          Length = 664

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 63/85 (74%)

Query: 301 MRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGE 360
           ++ +VVVA+DGSG+++T+++A+A  P     RYVIYVK GVYEE V + KK  N+ + G+
Sbjct: 347 LKPNVVVAKDGSGKFKTINDALAAMPKKYTGRYVIYVKEGVYEEYVTITKKMANVTMYGD 406

Query: 361 GMGETVITGSRSMAAGWTTFRSATF 385
           G  +T+ITG+R+   G TT+++ATF
Sbjct: 407 GAKKTIITGNRNFVDGLTTYKTATF 431
>Os01g0311800 Similar to Pectin methylesterase 8 (Fragment)
          Length = 557

 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 62/84 (73%), Gaps = 3/84 (3%)

Query: 305 VVVAQDGSGRWRTVSEAVARAPSH---SRRRYVIYVKRGVYEENVEVRKKKTNIVIVGEG 361
           V V Q G+G + TVS+AVA AP++   ++  +VI+V  GVY ENV V K K  +++VG+G
Sbjct: 242 VTVDQSGAGNFTTVSDAVAAAPTNLDGTKGYFVIHVTAGVYAENVVVPKNKKYVMMVGDG 301

Query: 362 MGETVITGSRSMAAGWTTFRSATF 385
           +G+TVITG+RS+  GWTTF SATF
Sbjct: 302 IGQTVITGNRSVVDGWTTFNSATF 325
>Os09g0433700 Similar to Pectin methylesterase (Fragment)
          Length = 617

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 61/82 (74%)

Query: 304 DVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGEGMG 363
           +V+VA+DGSG+++T++EA+A  P     RYVIYVK GVY E V + KK  ++ + G+G  
Sbjct: 303 NVIVAKDGSGKFKTINEALAAMPKTYSGRYVIYVKEGVYAEYVTITKKMASVTMYGDGSR 362

Query: 364 ETVITGSRSMAAGWTTFRSATF 385
           ++++TGS++ A G TTF++ATF
Sbjct: 363 KSIVTGSKNFADGLTTFKTATF 384
>Os11g0172100 
          Length = 533

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 64/86 (74%), Gaps = 5/86 (5%)

Query: 304 DVVVAQDGSGRWRTVSEAV---ARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGE 360
           DVVVA+DG+G + TV EA+   AR  ++   R V+YVK GVY ENVEV    TN+++VG+
Sbjct: 188 DVVVAKDGTGHFCTVGEALKAAARRATNGGGRTVVYVKAGVYNENVEV--WTTNLMLVGD 245

Query: 361 GMGETVITGSRSMAAGWTTFRSATFG 386
           G+G TVITGSRS+  G+TTF SATFG
Sbjct: 246 GIGRTVITGSRSVRGGYTTFSSATFG 271
>Os04g0458900 Similar to Pectin methylesterase-like protein
          Length = 568

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 56/82 (68%)

Query: 304 DVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGEGMG 363
           + VVAQDGSG+++T+ EAV   P   + RYVIYVK G+Y+E V V K K NI + G+G  
Sbjct: 256 NAVVAQDGSGQFKTIQEAVNSMPKGHQGRYVIYVKAGLYDEIVMVPKDKVNIFMYGDGPK 315

Query: 364 ETVITGSRSMAAGWTTFRSATF 385
            + +TG +S A G TT ++ATF
Sbjct: 316 RSRVTGRKSFADGITTMKTATF 337
>Os07g0691100 Similar to Pectin methylesterase 6 (Fragment)
          Length = 566

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query: 301 MRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGE 360
            + DV VA DGSG  +T+ EAVA+ P  ++ RY IYVK G Y E V V +  TN+ ++G+
Sbjct: 242 FKPDVTVAADGSGDVKTIGEAVAKVPPKNKERYTIYVKAGTYNEYVSVGRPATNVNMIGD 301

Query: 361 GMGETVITGSRSMAAGWTTFRSAT 384
           G+G+T+ITG+++     TT  +AT
Sbjct: 302 GIGKTIITGNKNFKMNLTTKDTAT 325
>Os03g0300500 Similar to Pectin methylesterase 6 (Fragment)
          Length = 565

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 58/86 (67%)

Query: 299 KAMRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIV 358
           K  + DV VA DGSG ++T++EA+A+ P  S   YV+YVK G Y+E V V +  TN+V++
Sbjct: 239 KEFKPDVTVAADGSGDFKTINEALAKVPVKSTGTYVMYVKAGTYKEYVSVARNVTNLVMI 298

Query: 359 GEGMGETVITGSRSMAAGWTTFRSAT 384
           G+G  +T+ITG++S     TT  +AT
Sbjct: 299 GDGATKTIITGNKSFMLNITTKDTAT 324
>Os02g0783000 Similar to Pectin methylesterase 5 (Fragment)
          Length = 581

 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 91/223 (40%), Gaps = 52/223 (23%)

Query: 178 IHAWLSAAMGNQGTCLDGFHGTDSRLLRR-VESAVTQLTQLVSNLLAMHKKLRDIXXXXX 236
           +  WLSAA+ NQGTC D          R  V + V  L Q +   LA+H KL +      
Sbjct: 168 VTTWLSAALTNQGTCGDSLAAVPDPAARSAVRARVAALEQFIGTALALHAKLNNGGSGSS 227

Query: 237 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDLPPWXXXXXXXXXXXXXATXXXXXXXXX 296
                                         +  P W             +T         
Sbjct: 228 SPAPPS-----------------------RAAFPSWVTKHDRHLLSSPAST--------- 255

Query: 297 XXKAMRVDVVVAQDGSGRWRTVSEAV---------------ARAPSHSRRRYVIYVKRGV 341
               +  D VVA DGSG   ++S+A+               +      R R VIYVK G 
Sbjct: 256 ----IAPDAVVALDGSGTHTSISDAIAAVTAPPPPAHHPTASGGGGGGRSRKVIYVKAGR 311

Query: 342 YEENVEVRKKKTNIVIVGEGMGETVITGSRSMAAGWTTFRSAT 384
           YEE+V +  K+ +++++G+G G+TVI+G RS+A G+TT+ SAT
Sbjct: 312 YEESVSITSKQKDVMLLGDGKGKTVISGHRSVAGGYTTYASAT 354
>Os01g0312500 Similar to Pectin methylesterase isoform alpha (EC 3.1.1.11)
           (Fragment)
          Length = 426

 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 63/81 (77%)

Query: 304 DVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGEGMG 363
           D VVA+DGSG + TVS AVA AP++S +RYVI++K G Y ENVEV K K N++ +G+G+G
Sbjct: 115 DAVVAKDGSGGYTTVSAAVAAAPANSNKRYVIHIKAGAYMENVEVGKSKKNLMFIGDGIG 174

Query: 364 ETVITGSRSMAAGWTTFRSAT 384
           +TVI  SR++  G TTFRSAT
Sbjct: 175 KTVIKASRNVVDGSTTFRSAT 195
>Os01g0880300 Similar to Pectin methylesterase-like protein
          Length = 540

 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 2/89 (2%)

Query: 299 KAMRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIV 358
           K +  +V V   G   ++TV EAVA AP +    +V++VK GVY+E V V  +KTN+V+V
Sbjct: 224 KGLPPNVTVCGAGC-HYKTVGEAVAAAPDYGDEMFVVHVKEGVYKETVNVPLEKTNVVVV 282

Query: 359 GEGMGETVITGS-RSMAAGWTTFRSATFG 386
           G+GMG+TVITG   +   G +TF +AT G
Sbjct: 283 GDGMGKTVITGDLNADTPGVSTFNTATVG 311
>Os03g0399000 Pectinesterase family protein
          Length = 603

 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 178 IHAWLSAAMGNQGTCLDGFHGTDSRLLRRVESAVTQLTQLVSNLLAMHKKLRDIXXXXXX 237
           + AWLSA +  QG+C+D F      +  +V  A+ +  ++ SN +A+ ++          
Sbjct: 161 LQAWLSAVITFQGSCVDMF--PQGPIKDQVREAMEKAREISSNAIAIIQQGAAFAAMLDL 218

Query: 238 XXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDLPP---WXXXXXXXXXXXXXATXXXXXXX 294
                                          LPP   W                      
Sbjct: 219 HASESHAAEGEELDVDHDIQHHVDRHLEDQSLPPVPPWLSDE----------DRRMLTSG 268

Query: 295 XXXXKAMRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTN 354
                 +  +V VA+DGSG +  +S A+   P     +Y+IYVK GVY+E V V  +  N
Sbjct: 269 EEFVAGLTPNVTVAKDGSGDFTNISAALDALPEAYAGKYIIYVKEGVYDETVNVTSRMAN 328

Query: 355 IVIVGEGMGETVITGSRSMAAGWTTFRSATF 385
           I + G+G  ++++TGS+++A G   +++ATF
Sbjct: 329 ITMYGDGSKKSIVTGSKNIADGVRMWKTATF 359
>Os04g0641200 Similar to Pectin methylesterase-like protein
          Length = 971

 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 51/85 (60%)

Query: 301 MRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGE 360
            + D VVA+DGSG ++T++EAV   P +S  R+VIYVK G Y E V +     NI + G+
Sbjct: 656 QKPDKVVAKDGSGDFKTITEAVNAVPKNSPTRFVIYVKAGEYNEYVTIPSSLPNIFMYGD 715

Query: 361 GMGETVITGSRSMAAGWTTFRSATF 385
           G  +T + G++S   G  T  + TF
Sbjct: 716 GPTKTRVLGNKSNKDGVATMATRTF 740
>Os11g0192400 Virulence factor, pectin lyase fold family protein
          Length = 383

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 4/74 (5%)

Query: 299 KAMRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIV 358
           K MR  VVVA+DG+  + T+++A+  AP   R R+ I+VK GVYEE V +   + N+V+ 
Sbjct: 58  KRMRKTVVVAKDGTANFTTITQALGAAPP--RGRFGIFVKAGVYEETVNI--TRPNVVLW 113

Query: 359 GEGMGETVITGSRS 372
           GEG+G+TVITGSRS
Sbjct: 114 GEGIGKTVITGSRS 127
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,333,037
Number of extensions: 202474
Number of successful extensions: 682
Number of sequences better than 1.0e-10: 23
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 23
Length of query: 388
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 285
Effective length of database: 11,657,759
Effective search space: 3322461315
Effective search space used: 3322461315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)