Os08g0450200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectin methylesterase (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os08g0450200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectin methylesterase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 320.84 | 0.842 | 3.64 | 1.61 | 0.361 | 3.11 | -1.21 | 5.64 | -0.0388 | 4.19 | 5.144 | 5581 | 18.1 | 2.87 |
| 360.49 | 0.884 | 3.53 | 1.89 | 0.34 | 2.74 | -0.986 | -- | 0.101 | 3.78 | 5.038 | 5719 | 18.3 | 2.77 |
| 322.09 | 0.836 | 3.63 | 1.66 | 0.376 | 3.25 | -- | 5.87 | -0.0406 | 4.56 | 5.192 | 5683 | 18.2 | 2.55 |
| 356.15 | 0.879 | 3.56 | 1.7 | 0.458 | 2.58 | -- | -- | 0.0438 | 4.91 | 4.936 | 5982 | 18.6 | 2.41 |
| 329.15 | 0.845 | 3.63 | 1.66 | -- | 3.25 | -- | 5.87 | -0.023 | -- | 5.168 | 5670 | 18.2 | 2.55 |
| 504.52 | 1.05 | 3.64 | 1.11 | 0.427 | -- | -1.34 | -- | -0.317 | 4.28 | -- | -- | -- | -- |
| 508.67 | 1.06 | 3.63 | 1.13 | 0.443 | -- | -- | -- | -0.31 | 5.3 | -- | -- | -- | -- |
| 345.82 | 0.866 | 3.55 | 1.51 | -- | 2.61 | -- | -- | 0.0656 | -- | 4.953 | 5250 | 18.8 | 2.05 |
| 391.98 | 0.922 | 3.58 | -- | 0.351 | 2.41 | -- | -- | -0.0677 | 4.88 | 5.385 | 5107 | 19 | 1.97 |
| 518.92 | 1.06 | 3.63 | 1.14 | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
| 542.06 | 1.09 | 3.66 | -- | 0.462 | -- | -- | -- | -0.435 | 5.21 | -- | -- | -- | -- |
| 385.95 | 0.915 | 3.61 | -- | -- | 2.55 | -- | -- | -0.155 | -- | 5.487 | 5247 | 19 | 1.52 |
| 553.25 | 1.1 | 3.66 | -- | -- | -- | -- | -- | -0.425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 333.81 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 334.11 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 5 | 338.43 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 9 | 344.29 | wind | 7.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 13 | 346.55 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 27 | 355.14 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 51 | 361.65 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 63 | 363.21 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 75 | 364.30 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 92 | 365.20 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 96 | 365.61 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 105 | 366.29 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 132 | 367.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 133 | 367.54 | wind | 5.0 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 134 | 367.58 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 143 | 368.03 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 20 |
| 152 | 368.36 | wind | 9.0 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 159 | 368.64 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 163 | 368.69 | wind | 9.0 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 168 | 368.75 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 13 | 11 |
| 174 | 368.91 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 178 | 368.97 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 182 | 369.05 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 183 | 369.06 | wind | 9.0 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 185 | 369.09 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 194 | 369.19 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 207 | 369.36 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 18 |
| 256 | 370.07 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 261 | 370.11 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 277 | 370.32 | wind | 9.0 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 285 | 370.42 | wind | 9.0 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 290 | 370.50 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 16 |
| 295 | 370.56 | wind | 7.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 302 | 370.65 | wind | 9.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 304 | 370.69 | wind | 7.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 308 | 370.70 | wind | 5.0 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 321 | 371.02 | wind | 9.0 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 335 | 371.13 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 339 | 371.18 | wind | 9.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 375 | 371.60 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 427 | 372.12 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 438 | 372.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 440 | 372.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 451 | 372.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 480 | 372.72 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 813 | 374.64 | wind | 9.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 821 | 374.68 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 841 | 374.74 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 956 | 375.08 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 974 | 375.16 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 17 |