Os01g0254300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase 1) (PE 1).
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Os01g0254300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase 1) (PE 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.68 | 0.559 | 2.76 | 0.456 | 0.00354 | 3.34 | -0.541 | 14.4 | 0.03 | 7.23 | 9.338 | 725 | -- | -- |
| 155.98 | 0.582 | 2.66 | 0.147 | 0.0227 | 1.87 | -0.403 | -- | 0.156 | 7.54 | 10.47 | 385 | -- | -- |
| 142.42 | 0.556 | 2.76 | 0.469 | 0.0249 | 3.42 | -- | 15 | 0.0249 | 14.6 | 9.376 | 725 | -- | -- |
| 149.82 | 0.57 | 2.7 | 0.288 | 0.00308 | 0.48 | -- | -- | 0.0476 | 6.28 | 10.1 | 374 | -- | -- |
| 142.46 | 0.556 | 2.76 | 0.452 | -- | 3.43 | -- | 15 | 0.0315 | -- | 9.356 | 725 | -- | -- |
| 149.59 | 0.573 | 2.7 | 0.275 | 0.0131 | -- | 0.569 | -- | 0.0359 | 19.3 | -- | -- | -- | -- |
| 150.46 | 0.574 | 2.7 | 0.263 | 0.0146 | -- | -- | -- | 0.037 | 20.5 | -- | -- | -- | -- |
| 149.82 | 0.57 | 2.7 | 0.288 | -- | 0.48 | -- | -- | 0.0474 | -- | 10.1 | 373 | -- | -- |
| 151.98 | 0.574 | 2.7 | -- | 0.00299 | 0.353 | -- | -- | 0.0144 | 6.06 | 10.18 | 388 | -- | -- |
| 150.47 | 0.573 | 2.7 | 0.263 | -- | -- | -- | -- | 0.0368 | -- | -- | -- | -- | -- |
| 152.28 | 0.577 | 2.7 | -- | 0.0145 | -- | -- | -- | 0.00767 | 21.9 | -- | -- | -- | -- |
| 151.95 | 0.574 | 2.7 | -- | -- | 0.342 | -- | -- | 0.0133 | -- | 10.1 | 376 | -- | -- |
| 152.29 | 0.576 | 2.7 | -- | -- | -- | -- | -- | 0.00765 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.68 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 2 | 134.68 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 3 | 135.06 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 4 | 135.06 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 7 | 136.77 | wind | 1e+00 | 270 | < th | dose independent | rect. | 18 | 1 |
| 8 | 136.77 | wind | 1e+00 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 17 | 138.61 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 22 | 5 |
| 18 | 138.69 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 19 | 138.69 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 22 | 5 |
| 20 | 139.05 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 22 | 5 |
| 21 | 139.63 | wind | 1e+00 | 90 | < th | dose dependent | rect. | 20 | 2 |
| 24 | 139.64 | wind | 1e+00 | 90 | < th | dose independent | rect. | 20 | 2 |
| 36 | 139.92 | wind | 9e+00 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 37 | 139.97 | atmosphere | 1e+03 | 270 | < th | dose dependent | rect. | 17 | 4 |
| 38 | 139.97 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 17 | 7 |
| 45 | 140.02 | atmosphere | 1e+03 | 270 | < th | dose independent | rect. | 18 | 3 |
| 55 | 140.05 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 19 | 4 |
| 78 | 140.09 | atmosphere | 1e+03 | 270 | < th | dose dependent | rect. | 18 | 2 |
| 79 | 140.09 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 21 | 2 |
| 141 | 140.24 | atmosphere | 1e+03 | 90 | < th | dose independent | rect. | 22 | 1 |
| 142 | 140.24 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 22 | 2 |
| 163 | 140.26 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 18 | 7 |
| 175 | 140.28 | wind | 1e+00 | 10 | < th | dose independent | rect. | 21 | 1 |
| 187 | 140.28 | wind | 1e+00 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 191 | 140.28 | wind | 9e+00 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 209 | 140.31 | wind | 9e+00 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 252 | 140.44 | wind | 9e+00 | 720 | > th | dose dependent | sin | 11 | NA |
| 259 | 140.45 | wind | 9e+00 | 720 | > th | dose dependent | sin | 16 | NA |
| 309 | 140.54 | wind | 1e+00 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 361 | 140.66 | wind | 9e+00 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 401 | 140.73 | wind | 9e+00 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 413 | 140.74 | wind | 9e+00 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 464 | 140.80 | wind | 7e+00 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 469 | 140.81 | wind | 9e+00 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 611 | 141.00 | wind | 9e+00 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 612 | 141.00 | wind | 9e+00 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 638 | 141.10 | wind | 5e+00 | 10 | > th | dose independent | rect. | 7 | 1 |
| 647 | 141.10 | wind | 5e+00 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 656 | 141.11 | precipitation | 1e-01 | 90 | > th | dose independent | rect. | 7 | 1 |
| 664 | 141.11 | wind | 5e+00 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 669 | 141.11 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 687 | 141.15 | atmosphere | 1e+03 | 10 | < th | dose independent | sin | 11 | NA |
| 720 | 141.25 | wind | 1e+00 | 10 | < th | dose independent | rect. | 14 | 8 |
| 721 | 141.25 | wind | 9e+00 | 720 | > th | dose independent | rect. | 17 | 9 |
| 732 | 141.26 | wind | 9e+00 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 743 | 141.29 | wind | 9e+00 | 720 | > th | dose independent | rect. | 17 | 6 |
| 880 | 141.56 | atmosphere | 1e+03 | 10 | > th | dose independent | sin | 11 | NA |
| 946 | 141.65 | atmosphere | 1e+03 | 30 | < th | dose dependent | sin | 11 | NA |
| 972 | 141.70 | wind | 9e+00 | 1440 | < th | dose independent | rect. | 13 | 2 |