Os01g0311800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectin methylesterase 8 (Fragment).
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Os01g0311800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectin methylesterase 8 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 431.11 | 0.976 | 3.73 | -0.265 | 0.966 | 3.32 | -1.76 | -1.22 | 0.812 | 4.4 | 8.6 | 2131 | -- | -- |
| 430.95 | 0.967 | 3.74 | -0.232 | 0.971 | 3.59 | -1.75 | -- | 0.805 | 4.38 | 8.6 | 2118 | -- | -- |
| 438.69 | 0.976 | 3.72 | -0.236 | 0.972 | 3.42 | -- | -0.935 | 0.823 | 4.82 | 8.588 | 2118 | -- | -- |
| 438.74 | 0.976 | 3.73 | -0.206 | 0.971 | 3.61 | -- | -- | 0.822 | 4.81 | 8.579 | 2118 | -- | -- |
| 484.34 | 1.03 | 3.72 | -0.159 | -- | 3.3 | -- | -0.73 | 0.871 | -- | 8.6 | 2353 | -- | -- |
| 606.9 | 1.15 | 3.82 | -1.01 | 0.909 | -- | -2 | -- | 0.473 | 3.6 | -- | -- | -- | -- |
| 617.82 | 1.16 | 3.81 | -0.974 | 0.924 | -- | -- | -- | 0.484 | 4.22 | -- | -- | -- | -- |
| 484.42 | 1.03 | 3.74 | -0.136 | -- | 3.41 | -- | -- | 0.863 | -- | 8.6 | 2371 | -- | -- |
| 439.53 | 0.976 | 3.73 | -- | 0.98 | 3.67 | -- | -- | 0.861 | 4.89 | 8.3 | 2118 | -- | -- |
| 664.02 | 1.2 | 3.82 | -0.937 | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
| 642.8 | 1.19 | 3.79 | -- | 0.906 | -- | -- | -- | 0.592 | 4.24 | -- | -- | -- | -- |
| 484.87 | 1.03 | 3.73 | -- | -- | 3.46 | -- | -- | 0.88 | -- | 8.596 | 2371 | -- | -- |
| 687.16 | 1.22 | 3.79 | -- | -- | -- | -- | -- | 0.612 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 439.55 | wind | 7 | 1440 | < th | dose independent | rect. | 19 | 14 |
| 2 | 440.03 | wind | 9 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 4 | 440.09 | wind | 5 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 5 | 440.12 | wind | 7 | 1440 | > th | dose independent | rect. | 19 | 14 |
| 9 | 441.02 | wind | 5 | 1440 | > th | dose dependent | sin | 11 | NA |
| 10 | 441.39 | wind | 7 | 1440 | < th | dose independent | sin | 10 | NA |
| 14 | 442.02 | wind | 7 | 1440 | > th | dose independent | sin | 10 | NA |
| 20 | 442.90 | wind | 7 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 24 | 442.97 | wind | 7 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 26 | 443.15 | wind | 9 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 28 | 443.25 | wind | 7 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 34 | 443.64 | wind | 7 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 45 | 444.51 | wind | 9 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 70 | 446.13 | wind | 9 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 72 | 446.13 | wind | 9 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 106 | 447.26 | wind | 9 | 4320 | > th | dose dependent | rect. | 16 | 18 |
| 118 | 447.74 | wind | 9 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 138 | 448.60 | wind | 9 | 4320 | > th | dose dependent | rect. | 16 | 7 |
| 148 | 448.86 | wind | 9 | 4320 | > th | dose dependent | rect. | 16 | 13 |
| 157 | 448.98 | wind | 9 | 4320 | > th | dose dependent | rect. | 16 | 10 |
| 163 | 449.21 | wind | 5 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 186 | 450.06 | wind | 5 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 228 | 451.27 | wind | 7 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 301 | 453.27 | wind | 9 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 323 | 453.38 | wind | 5 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 337 | 453.78 | wind | 5 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 420 | 455.35 | wind | 5 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 479 | 456.04 | wind | 9 | 4320 | < th | dose independent | rect. | 16 | 21 |
| 498 | 456.39 | wind | 9 | 4320 | > th | dose dependent | rect. | 16 | 21 |
| 518 | 456.82 | wind | 9 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 613 | 458.11 | wind | 7 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 630 | 458.54 | wind | 9 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 642 | 458.79 | wind | 9 | 4320 | > th | dose independent | rect. | 16 | 21 |
| 702 | 460.05 | wind | 5 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 709 | 460.22 | wind | 9 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 727 | 460.35 | wind | 9 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 746 | 460.80 | wind | 9 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 758 | 461.03 | wind | 5 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 962 | 464.26 | wind | 5 | 1440 | > th | dose dependent | rect. | 18 | 22 |