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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0399000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pectinesterase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.25 (0.0575) R2 : 0.646
β1 : 3.5 (0.289) R2dD : 0.278 R2D : 0.307
β2 : 1.69 (0.126) R2dC : 0.142 R2C : 0.0971
β3 : 2.59 (0.191) R2dE : 0.187 R2E : -0.086
β4 : 3.08 (0.515) R2dD*C : 0.0299 R2D*C : 0.0236
β5 : 4.5 (0.752) R2dD*E : 0.0665 R2D*E : 0.176
γ1 : 0.981 (0.133) R2dN8 : 0.0827 R2N8 : -0.0518
σ : 0.973
deviance : 428.67
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C
peak time of C : 14.1
E
wheather : temperature
threshold : 23.07
memory length : 2083
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 12.6
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
428.67 0.973 4.25 3.5 1.69 2.59 3.08 4.5 0.981 14.1 23.07 2083 12.6 --
452.92 0.991 4.1 4.69 1.65 2.35 2.42 -- 1.34 14.7 24.11 2359 11.5 --
453.45 0.992 4.21 3.86 1.51 2.55 -- 3.75 1.14 14.3 23.3 2529 13.1 --
468.3 1.01 4.09 4.8 1.64 2.44 -- -- 1.41 14.4 23.97 2256 10.8 --
543.07 1.09 4.28 3.78 -- 2.31 -- 3.54 0.848 -- 24.15 2479 3.13 --
632.89 1.18 4.29 3.92 1.56 -- 2.54 -- 0.563 14.3 -- -- -- --
656.52 1.2 4.28 3.99 1.56 -- -- -- 0.578 14.2 -- -- -- --
550.17 1.09 4.13 4.83 -- 2.69 -- -- 1.26 -- 24.1 2479 2.75 --
1019.02 1.49 4.29 -- 1.49 1.25 -- -- 0.582 14.4 23.51 2163 8.29 --
801.38 1.32 4.29 3.93 -- -- -- -- 0.54 -- -- -- -- --
1076.85 1.54 4.38 -- 1.48 -- -- -- 0.133 14.1 -- -- -- --
1106.21 1.55 4.31 -- -- 1.6 -- -- 0.489 -- 24.3 2533 5.94 --
1208.42 1.62 4.39 -- -- -- -- -- 0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 450.31 temperature 20 1440 > th dose dependent rect. 5 2
5 452.45 temperature 25 4320 < th dose dependent rect. 21 1
17 456.63 temperature 25 720 < th dose dependent rect. 9 15
29 457.46 temperature 10 4320 > th dose dependent rect. 21 3
47 458.20 temperature 20 1440 > th dose dependent sin 8 NA
52 458.50 temperature 25 1440 < th dose dependent rect. 4 13
57 458.76 temperature 25 720 < th dose dependent sin 20 NA
174 460.90 temperature 25 1440 < th dose independent rect. 5 19
181 461.02 temperature 25 1440 < th dose dependent rect. 4 8
184 461.07 temperature 25 1440 < th dose independent rect. 2 21
197 461.24 temperature 25 1440 < th dose independent rect. 9 15
210 461.33 temperature 25 1440 < th dose dependent sin 2 NA
254 461.80 temperature 25 4320 < th dose dependent sin 14 NA
279 462.18 temperature 25 1440 < th dose independent rect. 18 23
285 462.23 temperature 20 1440 > th dose dependent rect. 15 16
371 462.99 temperature 25 1440 < th dose independent sin 18 NA
396 463.20 temperature 25 1440 < th dose independent rect. 9 23
453 463.84 temperature 25 1440 > th dose independent rect. 5 19
456 463.85 temperature 25 1440 > th dose independent rect. 10 14
501 464.23 temperature 30 1440 < th dose dependent rect. 5 2
527 464.46 temperature 20 1440 > th dose dependent rect. 11 20
535 464.51 temperature 20 4320 > th dose independent rect. 21 3
552 464.59 temperature 20 4320 > th dose independent rect. 22 1
560 464.63 temperature 25 4320 < th dose dependent rect. 1 1
565 464.66 temperature 25 4320 < th dose dependent rect. 1 3
583 464.75 temperature 25 1440 < th dose independent no NA NA
586 464.75 temperature 30 1440 < th dose dependent rect. 18 23
667 465.21 temperature 25 4320 < th dose dependent rect. 3 1
717 465.45 temperature 10 4320 > th dose dependent rect. 1 3
753 465.68 temperature 10 4320 > th dose dependent rect. 3 1
759 465.74 temperature 25 1440 > th dose independent sin 19 NA
794 465.88 temperature 30 1440 < th dose dependent rect. 14 23
816 465.97 temperature 25 1440 > th dose independent rect. 18 23
840 466.07 temperature 10 4320 > th dose dependent sin 12 NA
851 466.11 temperature 25 1440 < th dose independent rect. 13 23
864 466.19 temperature 10 1440 > th dose dependent rect. 22 15
900 466.32 temperature 30 1440 < th dose dependent no NA NA
918 466.40 temperature 10 1440 > th dose dependent sin 7 NA
953 466.50 temperature 25 1440 > th dose independent rect. 9 23
959 466.51 temperature 30 1440 < th dose dependent rect. 1 23