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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0192400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.77 (0.0298) R2 : 8.82e-11
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.26e-05 (0.0628) R2dN8 : 1.14e-10 R2N8 : 8.82e-11
σ : 0.562
deviance : 144.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.61 0.552 3.39 1.37 0.132 -72.4 0.347 -150 0.0135 6.09 15 90 -- --
140.61 0.557 2.77 0.0737 0.132 -1.25 0.347 -- 0.0143 6.1 15 90 -- --
140.88 0.553 3.39 1.38 0.135 -72.2 -- -150 0.0125 6.64 15.07 93 -- --
140.89 0.556 2.77 0.0782 0.135 -1.26 -- -- 0.0134 6.62 14.78 53 -- --
141.83 0.555 3.39 1.38 -- -72.2 -- -150 0.015 -- 15.09 93 -- --
143.67 0.562 2.77 0.026 0.131 -- 0.357 -- 0.00205 6.21 -- -- -- --
143.98 0.562 2.77 0.0297 0.133 -- -- -- 0.000695 6.01 -- -- -- --
141.84 0.557 2.77 0.081 -- -1.25 -- -- 0.016 -- 14.76 55 -- --
141.05 0.556 2.77 -- 0.136 -1.22 -- -- 0.00444 6.57 14.78 53 -- --
144.9 0.562 2.77 0.0336 -- -- -- -- 0.00372 -- -- -- -- --
144 0.561 2.77 -- 0.133 -- -- -- -0.00262 6 -- -- -- --
142.01 0.557 2.77 -- -- -1.21 -- -- 0.00678 -- 14.64 66 -- --
144.93 0.562 2.77 -- -- -- -- -- -1.26e-05 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.50 wind 1.0 30 < th dose independent rect. 2 2
3 133.35 wind 1.0 30 < th dose dependent rect. 2 2
8 134.56 precipitation 0.1 10 > th dose independent rect. 3 1
12 134.56 precipitation 0.1 10 > th dose dependent rect. 3 1
23 135.47 wind 1.0 270 < th dose dependent rect. 21 2
26 135.93 wind 1.0 10 < th dose independent rect. 2 6
32 136.82 precipitation 0.1 1440 > th dose independent rect. 15 1
33 136.82 precipitation 0.1 1440 > th dose dependent rect. 15 1
34 136.84 precipitation 0.1 1440 < th dose independent rect. 15 1
35 136.84 precipitation 0.1 1440 < th dose dependent rect. 15 1
38 137.10 wind 1.0 1440 > th dose independent rect. 15 1
39 137.12 temperature 20.0 10 > th dose independent rect. 2 2
42 137.41 humidity 90.0 1440 > th dose dependent rect. 15 1
43 137.43 temperature 30.0 10 > th dose dependent rect. 10 1
49 137.53 wind 1.0 10 < th dose dependent rect. 2 6
56 137.66 wind 1.0 90 < th dose independent rect. 6 1
59 137.72 wind 1.0 1440 < th dose independent rect. 15 1
60 137.72 wind 1.0 270 < th dose dependent rect. 2 1
66 137.91 temperature 25.0 30 > th dose dependent rect. 7 1
71 138.01 wind 1.0 10 < th dose independent rect. 2 10
74 138.10 temperature 30.0 270 > th dose independent rect. 9 1
76 138.12 humidity 90.0 1440 > th dose independent rect. 15 1
91 138.44 humidity 90.0 1440 < th dose independent rect. 15 1
93 138.44 temperature 15.0 10 > th dose independent rect. 4 22
95 138.46 wind 1.0 720 < th dose independent rect. 21 1
100 138.51 humidity 90.0 1440 > th dose dependent rect. 12 5
101 138.52 wind 1.0 10 < th dose independent rect. 2 14
108 138.54 temperature 15.0 270 > th dose independent rect. 19 15
109 138.55 humidity 90.0 1440 < th dose independent rect. 12 2
111 138.57 precipitation 0.1 10 > th dose independent rect. 3 5
138 138.58 precipitation 0.1 10 > th dose dependent rect. 3 5
196 138.85 precipitation 0.1 90 > th dose independent rect. 2 2
215 138.90 temperature 15.0 10 > th dose independent rect. 6 20
226 138.95 precipitation 0.1 1440 > th dose dependent rect. 13 4
228 138.97 temperature 15.0 90 > th dose independent rect. 17 8
229 138.97 temperature 15.0 10 > th dose independent rect. 17 9
234 139.02 humidity 90.0 1440 > th dose independent rect. 12 3
235 139.02 wind 1.0 270 < th dose dependent rect. 15 16
236 139.03 wind 1.0 270 < th dose dependent rect. 21 10
242 139.05 wind 3.0 720 < th dose independent rect. 16 7
251 139.08 precipitation 0.1 1440 > th dose independent rect. 13 4
252 139.08 wind 3.0 1440 < th dose independent rect. 14 10
263 139.10 wind 1.0 10 < th dose dependent rect. 2 10
266 139.11 wind 3.0 720 > th dose independent rect. 15 8
268 139.12 temperature 30.0 10 > th dose independent rect. 10 1
270 139.12 wind 1.0 1440 < th dose dependent rect. 15 1
338 139.14 temperature 15.0 270 > th dose independent rect. 15 9
342 139.16 wind 1.0 270 < th dose dependent sin 14 NA
352 139.19 precipitation 0.1 1440 < th dose independent rect. 11 4
353 139.19 precipitation 0.1 1440 < th dose dependent rect. 11 4
361 139.20 wind 3.0 1440 > th dose independent rect. 14 10
392 139.26 temperature 15.0 270 > th dose independent rect. 4 20
396 139.27 radiation 40.0 1440 > th dose independent rect. 12 1
402 139.27 wind 5.0 1440 < th dose dependent rect. 15 9
409 139.30 radiation 40.0 1440 < th dose independent rect. 12 1
418 139.31 wind 1.0 270 < th dose independent rect. 20 11
446 139.34 wind 1.0 270 < th dose dependent rect. 21 7
471 139.38 wind 1.0 270 < th dose independent rect. 15 16
477 139.40 precipitation 0.1 90 > th dose independent rect. 24 4
486 139.41 temperature 15.0 10 > th dose independent rect. 9 17
494 139.42 precipitation 0.1 90 > th dose dependent rect. 24 4
496 139.42 wind 1.0 270 < th dose dependent rect. 15 13
505 139.44 wind 1.0 1440 > th dose dependent rect. 15 9
512 139.45 radiation 30.0 1440 > th dose dependent rect. 12 1
567 139.53 atmosphere 1005.0 90 < th dose dependent rect. 2 1
588 139.57 precipitation 0.1 1440 > th dose independent rect. 12 8
603 139.58 wind 1.0 270 < th dose dependent rect. 9 22
613 139.60 temperature 15.0 10 > th dose independent rect. 17 23
624 139.62 wind 1.0 90 < th dose dependent rect. 6 1
647 139.66 atmosphere 1005.0 10 < th dose dependent rect. 4 1
682 139.69 temperature 15.0 270 > th dose independent rect. 19 4
736 139.74 precipitation 0.1 1440 < th dose independent rect. 10 10
742 139.74 precipitation 0.1 1440 < th dose dependent rect. 10 10
772 139.77 wind 5.0 1440 < th dose dependent rect. 19 1
835 139.81 wind 1.0 1440 > th dose independent rect. 21 1
884 139.83 temperature 15.0 10 > th dose independent rect. 20 6
895 139.84 temperature 15.0 10 > th dose independent rect. 21 16
898 139.84 wind 1.0 4320 > th dose dependent rect. 15 5
913 139.86 wind 5.0 720 > th dose independent rect. 6 1
923 139.87 precipitation 0.1 1440 > th dose independent sin 21 NA
930 139.87 wind 1.0 1440 > th dose dependent rect. 19 1
946 139.89 wind 9.0 4320 < th dose dependent rect. 15 5