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Os01g0234300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectin methylesterase 8 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.43 (0.0295) R2 : 0.827
β1 : -0.755 (0.108) R2dD : 0.0205 R2D : 0.0282
β2 : 1.78 (0.0773) R2dC : 0.244 R2C : 0.481
β3 : -2.24 (0.0862) R2dE : 0.316 R2E : 0.559
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.141 (0.0629) R2dN8 : 0.00289 R2N8 : 0.000752
σ : 0.551
deviance : 139.94
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C
peak time of C : 12.8
E
wheather : precipitation
threshold : 0.4983
memory length : 254
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.54
open length of G : 2.63

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.21 0.554 8.42 -0.809 1.75 -2.31 -0.524 -0.868 -0.148 12.7 0.03158 255 0.317 2.97
140.12 0.551 8.42 -0.75 1.78 -2.27 -0.342 -- -0.127 12.7 0.2529 259 0.393 2.83
139.37 0.55 8.42 -0.791 1.76 -2.23 -- -0.502 -0.146 12.7 0.4999 258 0.451 2.73
139.94 0.551 8.43 -0.755 1.78 -2.24 -- -- -0.141 12.8 0.4983 254 0.54 2.63
287.74 0.79 8.46 -0.895 -- -3.01 -- -0.357 -0.195 -- 0.4789 283 0.05 2.55
269.06 0.769 8.44 -0.882 2.94 -- 0.177 -- -0.144 14.4 -- -- -- --
269.17 0.768 8.44 -0.877 2.94 -- -- -- -0.143 14.4 -- -- -- --
285.72 0.787 8.45 -0.793 -- -3 -- -- -0.177 -- 0.5 287 0.0166 2.55
155.76 0.581 8.41 -- 1.79 -2.27 -- -- -0.0889 12.8 0.3761 250 0.65 2.55
780.86 1.31 8.46 -1 -- -- -- -- -0.215 -- -- -- -- --
289.46 0.796 8.42 -- 2.96 -- -- -- -0.0448 14.4 -- -- -- --
302.45 0.81 8.43 -- -- -3.03 -- -- -0.0645 -- 0.3694 285 0.00113 2.58
807.34 1.33 8.44 -- -- -- -- -- -0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.33 precipitation 0.1 270 < th dose independent rect. 24 3
2 141.33 precipitation 0.1 270 < th dose dependent rect. 24 3
3 141.37 wind 7.0 270 < th dose independent rect. 24 3
4 141.86 atmosphere 1010.0 270 < th dose independent rect. 24 3
8 141.91 temperature 10.0 270 > th dose independent rect. 24 3
10 141.91 temperature 30.0 270 < th dose independent rect. 24 3
11 141.91 humidity 50.0 270 > th dose independent rect. 24 3
14 141.91 atmosphere 995.0 270 > th dose independent rect. 24 3
15 141.91 radiation 1.0 270 < th dose independent rect. 24 3
20 141.91 temperature 10.0 270 > th dose independent rect. 3 21
21 141.91 radiation 1.0 270 < th dose dependent rect. 24 3
51 142.67 wind 9.0 270 < th dose independent rect. 3 21
52 143.26 wind 9.0 270 < th dose dependent rect. 24 3
55 144.63 radiation 1.0 90 < th dose independent rect. 1 5
56 144.68 radiation 10.0 90 < th dose dependent rect. 1 5
61 146.04 precipitation 0.1 270 < th dose independent rect. 3 21
62 146.04 precipitation 0.1 270 < th dose dependent rect. 3 21
64 146.47 wind 9.0 90 < th dose independent rect. 5 20
80 146.83 temperature 10.0 90 > th dose independent rect. 5 20
95 147.80 precipitation 0.1 90 < th dose independent rect. 5 20
96 147.80 precipitation 0.1 90 < th dose dependent rect. 5 20
97 147.87 radiation 30.0 10 < th dose dependent rect. 1 5
106 148.69 precipitation 0.1 10 < th dose independent rect. 6 19
107 148.69 precipitation 0.1 10 < th dose dependent rect. 6 19
108 148.71 wind 9.0 10 < th dose independent rect. 6 19
109 148.71 wind 9.0 10 < th dose dependent rect. 1 5
111 148.92 precipitation 0.1 10 < th dose independent rect. 1 5
112 148.92 precipitation 0.1 10 < th dose dependent rect. 1 5
113 149.03 wind 7.0 10 < th dose independent rect. 1 5
119 149.32 temperature 10.0 10 > th dose independent rect. 1 5
121 149.32 temperature 30.0 10 < th dose independent rect. 1 5
122 149.32 humidity 50.0 10 > th dose independent rect. 1 5
125 149.32 atmosphere 995.0 10 > th dose independent rect. 1 5
126 149.32 atmosphere 1010.0 10 < th dose independent rect. 1 5
128 149.32 radiation 20.0 10 < th dose independent rect. 1 5
131 149.32 temperature 10.0 10 > th dose independent rect. 6 19
140 149.54 wind 1.0 270 > th dose independent rect. 24 3
181 150.02 humidity 50.0 270 > th dose dependent rect. 24 3
204 150.79 radiation 1.0 90 < th dose dependent rect. 1 13
235 151.15 radiation 1.0 90 < th dose dependent rect. 1 10
240 151.20 atmosphere 995.0 270 > th dose dependent rect. 24 3
246 151.34 wind 9.0 1440 < th dose independent rect. 2 5
247 151.34 temperature 10.0 1440 > th dose independent rect. 2 5
250 151.34 temperature 30.0 1440 < th dose independent rect. 2 5
254 151.34 humidity 50.0 1440 > th dose independent rect. 2 5
259 151.34 atmosphere 995.0 1440 > th dose independent rect. 2 5
260 151.34 radiation 40.0 1440 < th dose independent rect. 2 5
264 151.34 temperature 10.0 1440 > th dose independent rect. 7 19
285 153.28 temperature 30.0 270 < th dose dependent rect. 1 2
298 154.04 radiation 1.0 90 < th dose independent rect. 1 13
302 154.16 atmosphere 995.0 10 > th dose dependent rect. 1 5
308 154.39 radiation 1.0 90 < th dose independent rect. 1 10
331 154.48 temperature 30.0 90 < th dose dependent rect. 1 4
344 156.08 temperature 10.0 270 > th dose dependent rect. 24 3
347 156.29 humidity 50.0 10 > th dose dependent rect. 1 5
355 157.01 atmosphere 995.0 90 > th dose independent rect. 5 20
362 157.37 atmosphere 995.0 10 > th dose independent rect. 6 19
434 159.93 precipitation 0.1 270 < th dose independent rect. 24 14
435 159.93 precipitation 0.1 270 < th dose dependent rect. 24 14
488 162.42 atmosphere 1015.0 270 < th dose independent rect. 24 14
494 162.48 temperature 10.0 270 > th dose independent rect. 14 10
495 162.48 temperature 10.0 270 > th dose independent rect. 24 14
496 162.48 atmosphere 995.0 270 > th dose independent rect. 24 14
510 162.80 radiation 40.0 270 < th dose independent rect. 14 10
561 163.61 atmosphere 995.0 270 > th dose independent rect. 3 21
563 163.65 wind 9.0 270 < th dose independent rect. 14 10
617 164.12 wind 9.0 270 < th dose independent rect. 24 14
677 164.89 precipitation 0.1 270 < th dose independent rect. 14 10
678 164.89 precipitation 0.1 270 < th dose dependent rect. 14 10
692 165.47 radiation 1.0 90 < th dose dependent sin 4 NA
699 165.62 atmosphere 1015.0 10 < th dose independent rect. 6 19
710 165.81 temperature 30.0 10 < th dose dependent rect. 1 5
866 168.38 wind 1.0 30 > th dose independent rect. 6 19
876 168.60 humidity 50.0 10 > th dose independent rect. 6 19
911 168.97 wind 9.0 90 < th dose dependent rect. 5 20
920 169.30 atmosphere 1015.0 1440 < th dose independent rect. 2 5
977 171.09 wind 9.0 10 < th dose dependent rect. 6 19
989 171.58 atmosphere 1015.0 270 < th dose dependent rect. 1 2