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Os01g0880300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectin methylesterase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.99 (0.0417) R2 : 0.658
β1 : -3.26 (0.174) R2dD : 0.394 R2D : 0.179
β2 : 1.19 (0.11) R2dC : 0.117 R2C : 0.166
β3 : 2.84 (0.284) R2dE : 0.15 R2E : 0.225
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.91 (0.911) R2dD*E : 0.0946 R2D*E : -0.298
γ1 : -0.821 (0.0896) R2dN8 : 0.0918 R2N8 : 0.0085
σ : 0.738
deviance : 251.15
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_____
C
peak time of C : 22
E
wheather : radiation
threshold : 0.9267
memory length : 1565
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.66 0.754 7.99 -3.34 1.72 2.82 1.28 7.56 -0.804 23.1 0.6633 1449 -- --
285.07 0.786 7.88 -2.93 1.94 1.23 1.4 -- -0.67 22.2 12.13 3591 -- --
251.15 0.738 7.99 -3.26 1.19 2.84 -- 6.91 -0.821 22 0.9267 1565 -- --
271.56 0.768 7.91 -2.56 1.35 1.8 -- -- -0.651 22 2.76 1611 -- --
310.2 0.82 7.88 -3 -- 3.97 -- 7.2 -0.646 -- 1.124 1588 -- --
295.85 0.806 7.91 -2.88 1.75 -- 1.29 -- -0.847 23 -- -- -- --
302.85 0.815 7.91 -2.94 1.74 -- -- -- -0.851 23 -- -- -- --
315.47 0.831 7.86 -2.89 -- 1.28 -- -- -0.801 -- 2.76 1611 -- --
277.81 0.776 7.68 -- 1.78 2.48 -- -- 0.157 23.1 0.008086 47520 -- --
491.54 1.04 7.87 -2.9 -- -- -- -- -0.838 -- -- -- -- --
530.14 1.08 7.84 -- 1.72 -- -- -- -0.524 22.9 -- -- -- --
463.56 1 7.68 -- -- 2.46 -- -- 0.151 -- 8.18e-07 44950 -- --
712.99 1.25 7.79 -- -- -- -- -- -0.517 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 238.87 radiation 10 43200 < th dose independent rect. 5 1
2 238.91 radiation 10 43200 < th dose independent rect. 22 8
3 238.92 radiation 10 43200 < th dose independent rect. 24 6
6 238.97 radiation 10 43200 < th dose independent rect. 18 12
24 239.50 radiation 10 43200 < th dose independent rect. 17 2
27 239.54 radiation 10 43200 < th dose independent rect. 17 6
33 239.85 radiation 1 43200 > th dose independent rect. 10 2
37 239.88 radiation 40 43200 < th dose independent rect. 15 13
43 240.01 radiation 40 43200 < th dose independent rect. 15 4
45 240.03 radiation 40 43200 < th dose independent rect. 15 2
48 240.09 radiation 1 14400 < th dose dependent rect. 19 10
50 240.10 radiation 40 43200 < th dose independent rect. 15 8
54 240.14 radiation 40 43200 < th dose independent rect. 15 17
58 240.31 radiation 1 43200 < th dose independent rect. 10 2
59 240.31 radiation 1 43200 < th dose dependent rect. 10 2
60 240.56 radiation 1 43200 > th dose independent rect. 8 4
67 240.83 radiation 1 43200 < th dose independent rect. 8 4
76 241.07 radiation 1 43200 < th dose dependent rect. 7 7
79 241.13 wind 1 43200 < th dose independent rect. 20 9
81 241.16 radiation 1 43200 < th dose dependent rect. 8 5
82 241.19 radiation 10 43200 > th dose dependent rect. 17 1
98 241.33 radiation 40 43200 < th dose dependent rect. 22 7
99 241.33 wind 1 43200 < th dose dependent rect. 19 11
100 241.35 radiation 20 43200 > th dose dependent rect. 16 15
101 241.38 temperature 20 43200 < th dose dependent rect. 22 1
133 241.90 temperature 20 43200 > th dose independent rect. 14 2
134 241.92 temperature 20 43200 < th dose independent rect. 15 1
142 242.08 wind 1 43200 < th dose dependent rect. 22 7
148 242.20 radiation 40 43200 < th dose independent rect. 7 1
156 242.31 temperature 20 43200 < th dose independent rect. 21 2
162 242.40 radiation 40 43200 < th dose independent rect. 22 10
168 242.45 radiation 1 43200 < th dose dependent rect. 7 2
169 242.46 radiation 40 43200 < th dose independent rect. 24 8
173 242.48 temperature 20 43200 > th dose independent rect. 21 1
216 242.81 radiation 1 43200 > th dose independent rect. 4 1
228 242.81 radiation 1 43200 > th dose dependent rect. 4 1
240 242.82 wind 7 43200 > th dose dependent rect. 11 2
282 242.99 humidity 80 43200 > th dose dependent rect. 14 1
300 243.23 radiation 10 43200 < th dose dependent rect. 3 2
304 243.25 wind 9 43200 < th dose independent rect. 11 1
327 243.47 temperature 20 43200 < th dose independent rect. 13 9
346 243.62 wind 9 43200 > th dose independent rect. 11 1
361 243.69 wind 1 43200 < th dose dependent rect. 14 5
398 243.97 temperature 30 43200 > th dose independent rect. 14 1
400 243.98 temperature 20 43200 < th dose independent rect. 7 1
404 244.02 temperature 20 43200 < th dose dependent sin 17 NA
418 244.12 temperature 30 43200 < th dose independent rect. 14 1
429 244.17 humidity 80 43200 > th dose independent rect. 3 14
436 244.19 temperature 20 43200 > th dose independent rect. 18 1
439 244.21 wind 1 43200 > th dose independent rect. 20 9
460 244.31 humidity 80 43200 > th dose dependent rect. 13 15
479 244.44 temperature 20 43200 > th dose independent rect. 7 1
486 244.49 temperature 20 43200 > th dose independent rect. 18 5
491 244.53 temperature 20 43200 < th dose independent rect. 1 1
493 244.53 temperature 20 43200 > th dose independent rect. 13 10
504 244.62 radiation 1 43200 < th dose independent rect. 13 1
506 244.62 humidity 80 43200 < th dose independent rect. 3 13
507 244.62 radiation 1 43200 < th dose dependent rect. 13 1
515 244.64 wind 1 43200 > th dose independent rect. 16 3
517 244.64 temperature 25 14400 > th dose dependent rect. 12 1
528 244.68 wind 1 43200 < th dose independent rect. 16 3
535 244.70 radiation 1 43200 > th dose independent rect. 13 1
543 244.72 temperature 20 43200 < th dose independent rect. 7 16
546 244.73 wind 1 43200 < th dose dependent rect. 20 1
551 244.74 wind 1 43200 > th dose independent rect. 19 11
605 244.99 temperature 20 43200 < th dose independent rect. 18 1
659 245.20 temperature 20 43200 > th dose independent rect. 7 16
666 245.23 temperature 20 43200 < th dose independent sin 19 NA
745 245.45 temperature 20 43200 < th dose independent rect. 4 1
788 245.55 temperature 20 43200 > th dose independent rect. 4 1
790 245.55 humidity 70 43200 < th dose independent rect. 1 7
793 245.55 radiation 30 43200 > th dose dependent rect. 7 1
842 245.63 temperature 20 43200 < th dose dependent no NA NA
847 245.63 temperature 20 43200 < th dose dependent rect. 13 23
848 245.63 temperature 20 43200 < th dose dependent rect. 18 23
858 245.64 temperature 20 43200 < th dose dependent rect. 16 23
885 245.67 temperature 20 43200 < th dose dependent rect. 20 23
889 245.68 temperature 20 43200 < th dose dependent rect. 2 23
984 245.85 temperature 20 43200 > th dose independent sin 20 NA
988 245.85 wind 1 43200 < th dose dependent sin 11 NA