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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0172100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.59 (0.0367) R2 : 0.000805
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0469 (0.0773) R2dN8 : 0.00104 R2N8 : 0.000805
σ : 0.691
deviance : 219.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.23 0.656 4.58 -0.118 0.373 1.31 0.977 2.53 -0.156 5 12.55 342 -- --
198.31 0.661 4.64 -0.494 0.45 1.35 0.0745 -- -0.271 1.67 15.41 318 -- --
197.02 0.654 4.6 -0.198 0.372 1.29 -- 1.73 -0.185 4.54 14.93 320 -- --
198.32 0.66 4.64 -0.494 0.451 1.33 -- -- -0.271 1.65 15.76 292 -- --
201.1 0.66 4.58 -0.0995 -- 0.863 -- 1.83 -0.125 -- 15.3 1091 -- --
217.43 0.691 4.6 -0.231 0.0848 -- -0.229 -- -0.0717 21.6 -- -- -- --
217.62 0.691 4.6 -0.223 0.0855 -- -- -- -0.0716 22.1 -- -- -- --
203.48 0.664 4.63 -0.475 -- 0.678 -- -- -0.235 -- 20.1 1511 -- --
204.15 0.669 4.63 -- 0.388 0.963 -- -- -0.189 1.56 19.27 101 -- --
218.06 0.69 4.6 -0.222 -- -- -- -- -0.0715 -- -- -- -- --
218.93 0.692 4.59 -- 0.0847 -- -- -- -0.0467 21.9 -- -- -- --
207.81 0.671 4.58 -- -- 0.575 -- -- -0.00292 -- 28 1696 -- --
219.36 0.691 4.59 -- -- -- -- -- -0.0469 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.65 temperature 10 30 > th dose dependent rect. 3 23
6 192.95 temperature 30 90 < th dose dependent rect. 20 22
8 193.07 temperature 30 10 < th dose dependent rect. 20 23
14 193.42 temperature 30 270 < th dose dependent rect. 7 22
21 193.78 temperature 10 720 > th dose dependent rect. 21 18
75 195.46 temperature 20 270 > th dose dependent rect. 20 23
82 195.56 temperature 15 270 > th dose dependent no NA NA
90 195.59 temperature 10 270 > th dose dependent rect. 10 23
91 195.61 temperature 30 270 < th dose dependent rect. 7 10
100 195.71 temperature 30 720 < th dose dependent rect. 24 18
104 195.77 temperature 20 270 > th dose dependent rect. 17 23
108 195.82 temperature 10 720 > th dose dependent rect. 21 14
119 195.88 temperature 20 270 > th dose dependent rect. 15 23
127 195.93 temperature 10 720 > th dose dependent sin 6 NA
134 195.97 temperature 30 270 < th dose dependent rect. 13 23
139 196.00 temperature 15 10 > th dose dependent rect. 23 23
147 196.04 temperature 30 270 < th dose dependent rect. 17 23
152 196.06 temperature 30 720 < th dose dependent sin 4 NA
179 196.20 temperature 15 270 > th dose dependent rect. 4 15
180 196.20 temperature 30 720 < th dose dependent rect. 24 21
184 196.22 temperature 30 270 < th dose dependent no NA NA
191 196.25 temperature 15 10 > th dose dependent no NA NA
242 196.45 temperature 10 720 > th dose dependent rect. 3 12
244 196.47 temperature 10 720 > th dose dependent rect. 3 8
266 196.53 temperature 30 10 < th dose dependent rect. 21 16
272 196.55 temperature 30 90 < th dose independent rect. 9 9
328 196.73 temperature 30 720 < th dose dependent rect. 1 12
441 197.10 temperature 10 270 > th dose dependent sin 1 NA
444 197.11 temperature 30 720 < th dose dependent rect. 5 7
477 197.20 temperature 30 10 < th dose dependent rect. 9 23
570 197.46 temperature 25 720 < th dose independent rect. 6 7
578 197.47 temperature 20 10 > th dose dependent rect. 21 23
629 197.60 temperature 30 270 < th dose dependent sin 23 NA
649 197.65 temperature 30 720 < th dose dependent rect. 5 17
675 197.70 temperature 20 10 > th dose dependent rect. 7 23
723 197.82 temperature 30 720 < th dose dependent rect. 5 13
807 197.99 temperature 30 30 < th dose dependent rect. 1 23
948 198.24 temperature 20 720 > th dose dependent rect. 6 3
997 198.33 temperature 25 720 < th dose independent rect. 6 16