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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0788400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectinesterase (EC 3.1.1.11) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.43 (0.0448) R2 : 0.651
β1 : -0.208 (0.214) R2dD : 0.0017 R2D : -0.0318
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.01 (0.21) R2dE : 1.56 R2E : -0.248
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.9 (0.713) R2dD*E : 0.907 R2D*E : -0.868
γ1 : 0.384 (0.0939) R2dN8 : 0.022 R2N8 : -0.084
σ : 0.725
deviance : 242.58
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.236
memory length : 13010
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
230 0.713 4.44 -0.27 0.491 6.06 0.336 12.2 0.357 5.8 1.171 12979 -- --
355.55 0.878 4.03 1.9 0.759 5.56 -0.882 -- 1.1 17.5 3.371 12253 -- --
230.04 0.706 4.44 -0.294 0.492 6.02 -- 12.2 0.353 5.72 1.191 12963 -- --
349.83 0.871 4.06 1.72 0.67 4.88 -- -- 0.94 16.4 3.359 12135 -- --
242.58 0.725 4.43 -0.208 -- 6.01 -- 11.9 0.384 -- 1.236 13010 -- --
676.04 1.22 4.28 0.476 0.406 -- 0.213 -- -0.182 6.63 -- -- -- --
676.14 1.22 4.28 0.479 0.408 -- -- -- -0.183 6.52 -- -- -- --
295.05 0.8 3.97 2.28 -- 4.8 -- -- 1.23 -- 2.745 16718 -- --
406.25 0.939 4.09 -- 0.511 3.96 -- -- 0.677 15.4 4.581 12037 -- --
684.8 1.22 4.29 0.489 -- -- -- -- -0.175 -- -- -- -- --
682.18 1.22 4.29 -- 0.414 -- -- -- -0.236 6.46 -- -- -- --
389.46 0.919 4.07 -- -- 3.65 -- -- 0.807 -- 3.887 16305 -- --
691.1 1.23 4.3 -- -- -- -- -- -0.229 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.33 radiation 1 43200 < th dose dependent rect. 16 7
2 207.34 radiation 1 43200 < th dose dependent rect. 16 3
7 207.48 humidity 90 43200 > th dose dependent rect. 22 1
9 207.61 radiation 1 43200 < th dose dependent rect. 16 11
12 207.82 humidity 90 43200 > th dose dependent rect. 21 3
32 208.94 radiation 1 43200 < th dose dependent sin 15 NA
83 210.96 radiation 1 43200 < th dose dependent rect. 9 20
93 211.15 radiation 1 43200 < th dose independent rect. 7 15
96 211.15 radiation 1 43200 < th dose independent rect. 7 20
97 211.16 radiation 1 43200 < th dose independent rect. 7 12
106 211.24 radiation 1 43200 < th dose dependent rect. 8 11
108 211.24 radiation 1 43200 < th dose dependent rect. 8 15
198 212.17 radiation 1 43200 < th dose independent rect. 16 6
199 212.17 radiation 1 43200 < th dose independent rect. 16 11
204 212.19 radiation 1 43200 < th dose independent rect. 16 3
226 212.27 radiation 1 43200 > th dose independent rect. 17 2
256 212.53 radiation 1 43200 < th dose dependent rect. 2 17
258 212.54 radiation 1 43200 < th dose dependent rect. 4 15
261 212.54 radiation 1 43200 < th dose dependent rect. 4 18
263 212.54 radiation 1 43200 < th dose dependent rect. 2 20
294 212.70 radiation 1 43200 < th dose dependent rect. 21 22
299 212.72 radiation 1 43200 < th dose dependent no NA NA
335 213.00 radiation 1 43200 > th dose independent rect. 7 12
349 213.09 radiation 1 43200 < th dose independent sin 18 NA
444 214.19 humidity 90 43200 < th dose independent rect. 17 8
476 214.60 humidity 90 43200 > th dose dependent rect. 11 15
482 214.80 humidity 90 43200 < th dose independent rect. 21 2
483 214.80 humidity 90 43200 < th dose independent rect. 20 4
488 215.02 radiation 1 43200 < th dose independent rect. 17 21
519 215.53 radiation 1 43200 < th dose independent rect. 16 19
534 215.68 radiation 1 43200 > th dose independent sin 17 NA
554 215.85 humidity 90 43200 < th dose independent sin 16 NA
560 215.94 humidity 90 43200 < th dose independent rect. 10 16
566 216.06 humidity 90 43200 > th dose independent rect. 17 9
568 216.07 radiation 1 43200 < th dose independent rect. 13 22
572 216.11 radiation 1 43200 > th dose independent rect. 17 21
574 216.18 humidity 90 43200 > th dose independent rect. 18 6
586 216.21 humidity 90 43200 > th dose dependent rect. 6 20
590 216.31 radiation 1 43200 > th dose independent rect. 17 18
595 216.34 humidity 90 43200 > th dose independent rect. 21 3
599 216.34 humidity 90 43200 > th dose dependent sin 17 NA
682 216.94 radiation 1 43200 < th dose dependent rect. 4 2
683 216.94 radiation 1 43200 < th dose dependent rect. 2 4
687 216.97 radiation 1 43200 < th dose independent rect. 1 21
688 216.97 radiation 1 43200 < th dose independent rect. 1 23
690 216.98 radiation 1 43200 < th dose independent rect. 2 17
704 216.98 radiation 1 43200 < th dose independent rect. 23 23
705 216.99 radiation 1 43200 < th dose independent no NA NA
716 216.99 radiation 1 43200 < th dose independent rect. 21 22
753 217.19 temperature 20 43200 < th dose dependent rect. 4 2
767 217.24 radiation 1 43200 > th dose independent rect. 13 22
774 217.30 humidity 90 43200 > th dose independent rect. 10 16
782 217.39 radiation 1 43200 < th dose independent rect. 10 23
820 217.68 radiation 1 43200 < th dose dependent rect. 21 9
860 218.07 humidity 90 43200 > th dose independent sin 16 NA
876 218.30 radiation 1 43200 > th dose independent no NA NA
951 218.51 humidity 90 43200 > th dose independent rect. 22 1
989 218.75 radiation 1 43200 > th dose independent rect. 10 23