FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0433700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectin methylesterase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.0527) R2 : 0.314
β1 : 2.35 (0.193) R2dD : 0.234 R2D : 0.115
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.17 (0.253) R2dE : 0.0346 R2E : 0.00173
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.929 (0.114) R2dN8 : 0.139 R2N8 : 0.0726
σ : 0.981
deviance : 443.94
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1004
memory length : 1220
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
428.92 0.973 3.75 2.26 0.451 -0.753 0.273 -2.53 0.923 9.96 1006 1241 -- --
431.34 0.967 3.72 2.34 0.455 -1.15 0.329 -- 0.937 9.94 1004 1250 -- --
429.2 0.965 3.75 2.27 0.449 -0.756 -- -2.53 0.923 10.1 1007 1244 -- --
431.69 0.968 3.73 2.36 0.453 -1.16 -- -- 0.933 10.1 1004 1260 -- --
441.32 0.978 3.76 2.27 -- -0.766 -- -2.6 0.923 -- 1006 1218 -- --
451.62 0.996 3.71 2.24 0.466 -- 0.359 -- 1.03 10 -- -- -- --
452.11 0.996 3.71 2.25 0.463 -- -- -- 1.03 10.1 -- -- -- --
443.94 0.981 3.74 2.35 -- -1.17 -- -- 0.929 -- 1004 1220 -- --
575.12 1.12 3.79 -- 0.449 -0.785 -- -- 0.681 9.66 1006 1219 -- --
465.1 1.01 3.72 2.25 -- -- -- -- 1.03 -- -- -- -- --
585.77 1.13 3.76 -- 0.455 -- -- -- 0.778 9.78 -- -- -- --
586.7 1.13 3.8 -- -- -0.81 -- -- 0.672 -- 1006 1100 -- --
598.11 1.14 3.78 -- -- -- -- -- 0.778 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 404.74 temperature 30 14400 > th dose dependent rect. 8 1
15 408.14 temperature 30 14400 > th dose independent rect. 8 1
29 411.09 temperature 30 14400 < th dose independent rect. 4 5
31 411.24 temperature 30 14400 < th dose independent rect. 8 1
32 411.26 temperature 30 14400 < th dose independent rect. 1 8
34 411.42 temperature 30 14400 < th dose independent rect. 20 13
57 415.07 temperature 20 720 < th dose independent rect. 18 1
58 415.08 humidity 80 1440 > th dose independent rect. 6 1
59 416.40 temperature 20 720 < th dose independent rect. 12 7
60 416.43 temperature 20 720 < th dose independent rect. 15 4
67 417.34 humidity 80 270 < th dose dependent rect. 21 10
68 417.39 humidity 80 720 < th dose dependent rect. 21 2
69 417.60 radiation 20 1440 > th dose independent rect. 6 1
85 417.96 humidity 80 10 < th dose independent rect. 20 11
86 418.10 humidity 80 10 < th dose dependent rect. 20 11
90 418.20 humidity 80 1440 < th dose dependent rect. 22 10
107 418.64 temperature 20 1440 > th dose independent rect. 18 1
131 419.21 humidity 80 270 < th dose dependent rect. 23 8
135 419.52 humidity 80 1440 < th dose independent rect. 22 3
139 419.58 humidity 80 270 < th dose independent rect. 23 7
142 419.89 humidity 80 1440 < th dose independent rect. 6 1
147 420.06 humidity 80 1440 < th dose independent rect. 23 9
157 420.45 atmosphere 1000 1440 > th dose independent rect. 13 1
160 420.46 atmosphere 1005 1440 < th dose dependent rect. 13 1
161 420.58 temperature 20 720 > th dose independent rect. 11 9
165 420.68 atmosphere 1010 720 < th dose dependent rect. 15 9
167 420.76 humidity 80 720 < th dose independent rect. 21 6
174 420.95 atmosphere 1010 720 < th dose dependent rect. 13 12
210 421.76 atmosphere 1000 1440 < th dose independent rect. 13 1
217 421.96 humidity 80 270 < th dose independent rect. 1 3
219 421.97 humidity 80 270 < th dose dependent rect. 1 3
243 422.38 humidity 80 10 < th dose independent rect. 12 19
266 422.73 humidity 80 720 < th dose independent rect. 19 12
282 422.91 humidity 90 1440 < th dose dependent rect. 3 1
290 423.01 humidity 80 10 < th dose independent rect. 12 21
320 423.38 humidity 80 1440 > th dose independent rect. 1 6
321 423.38 humidity 90 1440 < th dose dependent rect. 2 5
340 423.57 wind 7 1440 > th dose independent rect. 8 1
346 423.62 humidity 90 1440 < th dose dependent rect. 5 1
355 423.68 atmosphere 1010 720 < th dose dependent sin 17 NA
358 423.69 atmosphere 1000 30 > th dose dependent rect. 14 19
371 423.79 atmosphere 995 720 > th dose dependent rect. 13 12
420 424.12 humidity 80 1440 > th dose independent rect. 1 2
440 424.36 atmosphere 995 720 > th dose dependent rect. 13 9
446 424.41 atmosphere 1000 270 > th dose dependent rect. 12 18
485 424.74 humidity 80 10 < th dose dependent rect. 2 5
518 425.11 humidity 80 10 < th dose independent rect. 2 4
592 425.51 atmosphere 1005 10 > th dose dependent rect. 24 9
615 425.74 humidity 80 270 < th dose independent rect. 11 20
634 425.86 atmosphere 1000 30 > th dose dependent rect. 12 21
668 426.01 wind 7 1440 > th dose independent rect. 1 8
690 426.16 humidity 80 1440 > th dose independent rect. 3 1
713 426.34 humidity 80 720 > th dose independent rect. 21 7
719 426.37 humidity 80 10 < th dose independent rect. 10 23
723 426.39 wind 7 1440 < th dose independent rect. 8 1
774 426.69 radiation 20 1440 > th dose independent rect. 12 1
777 426.72 humidity 80 720 < th dose independent sin 12 NA
786 426.77 atmosphere 995 720 > th dose dependent sin 17 NA
822 426.95 atmosphere 1000 1440 > th dose independent rect. 15 1
833 427.00 temperature 25 14400 < th dose independent rect. 2 1
836 427.01 temperature 20 720 < th dose dependent rect. 19 1
842 427.06 temperature 25 14400 > th dose dependent rect. 2 2
863 427.15 atmosphere 1010 90 < th dose dependent rect. 17 17
876 427.25 wind 7 4320 < th dose independent rect. 19 1
883 427.28 atmosphere 1000 720 > th dose independent rect. 13 9
896 427.36 atmosphere 1000 720 > th dose dependent rect. 19 3
914 427.46 atmosphere 1010 270 < th dose dependent rect. 16 15
949 427.60 atmosphere 1005 720 > th dose independent rect. 13 12
980 427.74 wind 5 4320 > th dose independent rect. 21 1
991 427.80 humidity 80 10 < th dose dependent rect. 24 7