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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0312500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectin methylesterase isoform alpha (EC 3.1.1.11) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5 (0.137) R2 : 0.23
β1 : -6.41 (0.79) R2dD : 0.425 R2D : 0.00164
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.28 (0.562) R2dE : 0.161 R2E : -0.0972
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -15.1 (4.6) R2dD*E : 0.0963 R2D*E : -0.322
γ1 : -1.82 (0.293) R2dN8 : 0.125 R2N8 : -0.022
σ : 2.12
deviance : 2063.98
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.25
memory length : 788
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.9
open length of G : 0.901

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2053.02 2.13 5.05 -6.56 0.447 3.56 -1.46 -16.4 -1.92 15.2 25.02 785 20.9 1.75
2120.66 2.14 4.99 -4.32 0.438 2.09 -0.225 -- -1.69 16.4 24.31 801 19.7 3.8
2056.28 2.11 5.05 -6.54 0.442 3.48 -- -15.5 -1.92 14.8 25.1 793 20.8 1.45
2100.86 2.13 4.88 -4.43 0.406 2.23 -- -- -1.56 15.9 24.05 737 21.6 1.01
2063.98 2.12 5 -6.41 -- 3.28 -- -15.1 -1.82 -- 25.25 788 20.9 0.901
2192.21 2.2 4.73 -3.98 0.758 -- 1.31 -- -1.18 4.98 -- -- -- --
2196.54 2.19 4.74 -3.98 0.769 -- -- -- -1.18 5.12 -- -- -- --
2099.62 2.13 4.9 -4.28 -- 1.88 -- -- -1.49 -- 24.1 742 22.1 0.15
2581.36 2.37 4.79 -- 0.261 1.59 -- -- -0.865 15.4 24.48 690 22.2 0.419
2227.49 2.21 4.75 -3.95 -- -- -- -- -1.16 -- -- -- -- --
2614.16 2.39 4.64 -- 0.7 -- -- -- -0.74 5.32 -- -- -- --
2574.97 2.36 4.73 -- -- 1.31 -- -- -0.9 -- 24.61 737 21.3 1.33
2639.74 2.4 4.65 -- -- -- -- -- -0.725 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2065.18 temperature 25 720 > th dose dependent rect. 21 2
4 2075.62 temperature 25 270 > th dose independent rect. 14 19
7 2079.04 humidity 50 1440 < th dose independent rect. 16 1
8 2079.46 wind 9 43200 > th dose dependent rect. 13 2
9 2079.53 humidity 50 1440 < th dose dependent rect. 16 1
12 2084.04 wind 9 43200 > th dose independent rect. 13 2
13 2084.09 radiation 40 43200 < th dose independent sin 12 NA
14 2084.15 radiation 40 43200 < th dose independent rect. 14 19
17 2085.20 wind 9 43200 < th dose independent rect. 13 2
19 2085.27 radiation 40 43200 < th dose dependent rect. 3 3
20 2085.48 temperature 25 720 > th dose independent rect. 21 2
22 2085.67 radiation 1 43200 > th dose dependent rect. 5 1
24 2085.77 radiation 40 43200 < th dose dependent rect. 1 5
27 2085.99 radiation 20 43200 < th dose independent rect. 16 16
32 2086.25 radiation 10 43200 < th dose independent rect. 6 1
34 2086.39 radiation 40 43200 < th dose dependent rect. 20 10
45 2086.86 radiation 40 43200 < th dose independent rect. 14 9
47 2086.86 radiation 40 43200 < th dose independent rect. 14 16
48 2086.87 radiation 40 43200 < th dose independent rect. 14 7
50 2086.89 radiation 40 43200 < th dose independent rect. 14 5
54 2086.94 radiation 40 43200 < th dose independent rect. 14 12
58 2086.96 radiation 40 43200 < th dose independent rect. 14 3
63 2087.01 radiation 40 43200 < th dose dependent rect. 22 8
107 2088.16 radiation 30 43200 > th dose dependent rect. 16 17
110 2088.37 radiation 40 43200 < th dose independent rect. 3 7
111 2088.39 radiation 40 43200 < th dose independent rect. 18 16
113 2088.40 radiation 40 43200 < th dose independent rect. 1 9
115 2088.42 radiation 30 43200 > th dose dependent rect. 7 2
130 2088.43 radiation 40 43200 < th dose independent rect. 7 3
134 2088.43 radiation 40 43200 < th dose independent rect. 20 14
156 2088.88 radiation 10 43200 > th dose dependent rect. 17 14
158 2089.09 humidity 90 14400 < th dose independent rect. 2 2
202 2090.20 radiation 20 43200 < th dose independent rect. 16 1
219 2090.74 wind 7 14400 > th dose dependent rect. 20 18
227 2091.75 radiation 10 43200 < th dose independent rect. 16 8
228 2091.76 radiation 10 43200 < th dose independent rect. 16 5
231 2091.77 radiation 10 43200 < th dose independent rect. 16 3
233 2091.79 temperature 30 720 > th dose dependent rect. 18 1
234 2091.79 temperature 30 4320 > th dose dependent rect. 18 1
265 2091.81 radiation 10 43200 < th dose independent rect. 16 10
278 2091.98 humidity 50 1440 > th dose independent rect. 16 1
289 2092.20 temperature 25 270 > th dose independent rect. 14 11
307 2092.67 radiation 40 43200 > th dose dependent rect. 15 20
330 2093.15 radiation 10 43200 < th dose independent sin 12 NA
351 2093.55 radiation 40 43200 > th dose dependent sin 11 NA
393 2093.91 humidity 80 43200 < th dose dependent rect. 21 1
423 2094.79 wind 9 14400 < th dose independent rect. 20 19
427 2094.91 radiation 10 43200 < th dose dependent rect. 18 13
447 2094.98 radiation 40 43200 < th dose independent rect. 10 23
462 2095.19 radiation 40 43200 < th dose dependent rect. 18 13
466 2095.22 wind 7 14400 > th dose independent rect. 20 18
534 2095.99 radiation 40 43200 < th dose independent rect. 3 21
536 2096.00 radiation 40 43200 < th dose independent rect. 3 16
542 2096.00 radiation 40 43200 < th dose independent rect. 1 20
548 2096.01 radiation 40 43200 < th dose independent rect. 7 12
549 2096.01 radiation 40 43200 < th dose independent rect. 3 14
550 2096.01 radiation 40 43200 < th dose independent rect. 5 14
551 2096.01 radiation 40 43200 < th dose independent rect. 7 14
570 2096.01 radiation 40 43200 < th dose independent rect. 7 23
571 2096.02 radiation 40 43200 < th dose independent no NA NA
573 2096.02 radiation 40 43200 < th dose independent rect. 7 10
574 2096.02 radiation 40 43200 < th dose independent rect. 5 12
591 2096.02 radiation 40 43200 < th dose independent rect. 22 21
598 2096.02 radiation 40 43200 < th dose independent rect. 18 23
599 2096.02 radiation 40 43200 < th dose independent rect. 20 23
614 2096.03 radiation 40 43200 < th dose independent rect. 20 21
720 2096.69 radiation 40 43200 < th dose independent rect. 10 1
824 2097.51 wind 7 14400 > th dose independent sin 5 NA
838 2097.83 wind 7 43200 < th dose independent rect. 11 6
866 2098.19 wind 7 43200 > th dose independent rect. 12 5
914 2098.40 humidity 70 720 > th dose independent rect. 18 8
933 2098.64 temperature 25 720 < th dose independent rect. 18 6
976 2099.01 wind 7 14400 > th dose independent rect. 23 16
978 2099.03 humidity 90 43200 > th dose independent rect. 2 5
982 2099.05 radiation 40 43200 < th dose independent rect. 10 11
983 2099.05 radiation 40 43200 < th dose independent rect. 10 13
987 2099.06 radiation 40 43200 < th dose independent rect. 10 9
990 2099.07 radiation 40 43200 < th dose independent rect. 10 7
992 2099.07 radiation 40 43200 < th dose independent rect. 10 16