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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0458900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectin methylesterase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.76 (0.054) R2 : 0.382
β1 : 1.1 (0.196) R2dD : 0.0417 R2D : 0.02
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.6 (0.208) R2dE : 0.257 R2E : 0.0488
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.7 (0.897) R2dD*E : 0.278 R2D*E : 0.0835
γ1 : -0.203 (0.118) R2dN8 : 0.00415 R2N8 : 0.0104
σ : 0.986
deviance : 448.25
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_____
C
peak time of C : --
E
wheather : wind
threshold : 5.533
memory length : 4052
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 3.68

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
446.42 0.993 3.75 0.893 0.225 2.29 1.41 10.8 -0.194 15.7 5.172 4009 19 3.25
544.66 1.09 3.68 0.813 0.268 2.29 0.654 -- -0.0907 14.1 5.546 3990 19 1.72
447.76 0.986 3.76 1.05 0.12 2.44 -- 11 -0.18 15.2 5.45 4173 18.5 3.48
533.02 1.08 3.58 0.944 0.145 2.43 -- -- -0.0214 14.6 6.833 4141 19 1.8
448.25 0.986 3.76 1.1 -- 2.6 -- 11.7 -0.203 -- 5.533 4052 18.4 3.68
686.85 1.23 3.71 0.788 0.252 -- 0.982 -- -0.329 14.7 -- -- -- --
690.15 1.23 3.71 0.812 0.254 -- -- -- -0.324 14.2 -- -- -- --
476.45 1.02 3.63 0.311 -- 3.6 -- -- 0.00492 -- 8.562 3839 19 1.57
458.57 0.997 3.65 -- 0.181 5.39 -- -- -0.152 15.6 9.848 3874 18.6 2.02
694 1.23 3.71 0.801 -- -- -- -- -0.33 -- -- -- -- --
707.5 1.24 3.73 -- 0.239 -- -- -- -0.414 14.1 -- -- -- --
459.25 0.998 3.68 -- -- 5.36 -- -- -0.183 -- 9.849 3835 19 1.89
710.92 1.24 3.73 -- -- -- -- -- -0.418 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 452.13 wind 5 4320 > th dose dependent rect. 19 3
5 453.45 wind 7 4320 < th dose independent rect. 18 4
15 457.94 wind 7 4320 > th dose independent rect. 18 4
16 458.19 humidity 90 1440 < th dose dependent rect. 3 1
32 463.98 wind 9 4320 > th dose dependent rect. 20 1
44 465.26 wind 9 4320 > th dose dependent rect. 19 7
71 467.19 humidity 90 1440 < th dose dependent rect. 23 8
131 472.89 humidity 90 1440 < th dose dependent rect. 2 5
143 475.83 atmosphere 995 14400 > th dose independent rect. 18 1
151 476.96 humidity 90 1440 < th dose dependent rect. 23 5
152 476.96 humidity 70 1440 > th dose dependent rect. 1 6
170 479.79 atmosphere 995 14400 < th dose independent rect. 18 1
173 479.79 atmosphere 995 14400 < th dose dependent rect. 18 1
207 481.46 humidity 70 1440 > th dose dependent rect. 3 1
226 483.89 humidity 80 1440 < th dose independent rect. 22 1
258 487.05 atmosphere 995 14400 > th dose independent rect. 13 6
297 487.87 atmosphere 995 14400 > th dose independent rect. 8 11
363 489.96 humidity 90 1440 < th dose dependent rect. 5 1
430 491.97 humidity 70 1440 > th dose dependent rect. 5 1
442 492.92 wind 7 4320 < th dose independent rect. 8 1
471 494.65 wind 7 4320 > th dose independent rect. 8 1
496 495.30 humidity 90 1440 < th dose dependent rect. 24 1
510 496.85 atmosphere 995 14400 > th dose independent rect. 4 12
513 496.91 atmosphere 995 14400 < th dose independent rect. 4 12
527 497.65 atmosphere 995 14400 > th dose independent rect. 19 21
543 498.16 wind 5 1440 > th dose independent rect. 7 16
602 499.28 radiation 1 14400 < th dose dependent rect. 19 8
605 499.37 atmosphere 995 14400 > th dose independent sin 3 NA
641 500.20 atmosphere 995 14400 < th dose independent sin 3 NA
642 500.22 atmosphere 995 14400 < th dose dependent sin 0 NA
736 501.55 wind 5 1440 < th dose independent rect. 7 16
738 501.58 atmosphere 995 14400 < th dose independent sin 23 NA
799 502.37 atmosphere 995 14400 > th dose independent rect. 8 18
809 502.39 atmosphere 995 14400 > th dose independent rect. 4 21
836 502.44 atmosphere 995 14400 > th dose independent rect. 24 21
892 502.53 atmosphere 995 14400 > th dose independent no NA NA
896 502.53 atmosphere 995 14400 > th dose independent rect. 14 23
943 503.06 atmosphere 995 14400 > th dose independent rect. 14 12
950 503.11 humidity 90 1440 < th dose independent rect. 2 1
997 503.41 atmosphere 995 14400 < th dose independent rect. 14 12