Os02g0288100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectinesterase (EC 3.1.1.11) (Fragment).
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Os02g0288100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectinesterase (EC 3.1.1.11) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.09 | 0.382 | 2.91 | 0.0628 | 0.176 | -0.154 | 0.489 | -0.244 | -0.0282 | 4.9 | 92.02 | 42 | -- | -- |
| 66.28 | 0.379 | 2.91 | 0.0505 | 0.169 | -0.159 | 0.342 | -- | -0.0345 | 5 | 92 | 42 | -- | -- |
| 66.53 | 0.38 | 2.91 | 0.051 | 0.166 | -0.144 | -- | -0.0614 | -0.0286 | 4.62 | 92.06 | 42 | -- | -- |
| 66.54 | 0.38 | 2.91 | 0.0489 | 0.164 | -0.148 | -- | -- | -0.0312 | 4.55 | 92.33 | 42 | -- | -- |
| 67.61 | 0.385 | 2.91 | 0.0435 | -- | -0.0604 | -- | -0.031 | -0.00653 | -- | 92.06 | 42 | -- | -- |
| 67.3 | 0.385 | 2.9 | 0.0258 | 0.0807 | -- | 0.296 | -- | 0.00622 | 6.48 | -- | -- | -- | -- |
| 67.49 | 0.385 | 2.9 | 0.0292 | 0.0847 | -- | -- | -- | 0.00495 | 5.6 | -- | -- | -- | -- |
| 67.58 | 0.383 | 2.91 | 0.0429 | -- | -0.0671 | -- | -- | -0.00856 | -- | 92 | 42 | -- | -- |
| 66.6 | 0.38 | 2.91 | -- | 0.164 | -0.144 | -- | -- | -0.0356 | 4.56 | 92.27 | 42 | -- | -- |
| 67.86 | 0.385 | 2.9 | 0.0319 | -- | -- | -- | -- | 0.007 | -- | -- | -- | -- | -- |
| 67.51 | 0.384 | 2.9 | -- | 0.0852 | -- | -- | -- | 0.0017 | 5.58 | -- | -- | -- | -- |
| 67.63 | 0.383 | 2.91 | -- | -- | -0.0644 | -- | -- | -0.0124 | -- | 92.16 | 42 | -- | -- |
| 67.89 | 0.385 | 2.9 | -- | -- | -- | -- | -- | 0.00345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.11 | temperature | 25.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 3 | 60.62 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 5 | 2 |
| 5 | 60.81 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 6 | 60.82 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 7 | 60.82 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 11 | 60.86 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 14 | 60.87 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 15 | 60.87 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 17 | 60.88 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 19 | 60.89 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 23 | 60.91 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 26 | 60.91 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 29 | 60.91 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 30 | 60.91 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 32 | 60.91 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 37 | 60.91 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 38 | 60.91 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 39 | 60.91 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 41 | 60.91 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 46 | 60.91 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 52 | 61.10 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 53 | 61.22 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 55 | 61.42 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 60 | 61.47 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 66 | 61.66 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 79 | 61.89 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 6 |
| 80 | 61.94 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 98 | 62.04 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 118 | 62.23 | radiation | 40.0 | 90 | > th | dose independent | rect. | 15 | 1 |
| 135 | 62.23 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 155 | 62.27 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 217 | 62.37 | radiation | 20.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 364 | 62.76 | humidity | 60.0 | 10 | < th | dose independent | rect. | 14 | 2 |
| 385 | 62.82 | wind | 1.0 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 450 | 63.10 | wind | 3.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 453 | 63.11 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 507 | 63.36 | wind | 1.0 | 90 | < th | dose independent | rect. | 15 | 1 |
| 579 | 63.46 | wind | 3.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 584 | 63.47 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 593 | 63.61 | wind | 3.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 612 | 63.69 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 683 | 63.79 | humidity | 60.0 | 10 | < th | dose independent | sin | 12 | NA |
| 747 | 63.94 | wind | 3.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 753 | 63.96 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 770 | 63.98 | humidity | 60.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 802 | 64.07 | humidity | 60.0 | 10 | > th | dose independent | sin | 12 | NA |
| 847 | 64.13 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 856 | 64.16 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 870 | 64.21 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 14 | 3 |