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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0641200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectin methylesterase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0265) R2 : 0.254
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.97 (0.49) R2dE : 0.244 R2E : 0.245
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.116 (0.0558) R2dN8 : 0.00913 R2N8 : 0.0103
σ : 0.497
deviance : 114.01
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.753
memory length : 31
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 3.13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.92 0.49 3.16 0.029 0.269 5.08 -0.305 -4.74 -0.108 11.9 6.701 31 18 3.08
109.02 0.486 3.16 0.037 0.27 6.1 -0.295 -- -0.108 11.9 6.722 32 18 3.04
109.31 0.487 3.16 0.0179 0.27 5.15 -- -4.26 -0.109 12.1 6.7 32 18 3.09
109.39 0.487 3.16 0.0257 0.271 6.07 -- -- -0.11 12.1 6.718 31 18 3.09
113.9 0.497 3.17 0.0136 -- 5.09 -- -4.3 -0.108 -- 6.7 31 18 3.1
146.94 0.568 3.17 -0.047 0.253 -- -0.232 -- -0.142 13.4 -- -- -- --
147.16 0.568 3.17 -0.0549 0.253 -- -- -- -0.144 13.4 -- -- -- --
114 0.497 3.17 0.016 -- 5.98 -- -- -0.114 -- 6.759 31 18 3.12
109.41 0.487 3.16 -- 0.271 6.06 -- -- -0.113 12.1 6.712 31 18 3.1
151.09 0.574 3.18 -0.0648 -- -- -- -- -0.149 -- -- -- -- --
147.24 0.568 3.17 -- 0.254 -- -- -- -0.138 13.4 -- -- -- --
114.01 0.497 3.17 -- -- 5.97 -- -- -0.116 -- 6.753 31 18 3.13
151.2 0.574 3.18 -- -- -- -- -- -0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.44 wind 7 30 > th dose dependent rect. 18 3
3 109.48 wind 7 10 > th dose independent rect. 19 1
112 125.62 wind 7 30 > th dose independent rect. 18 18
153 129.94 wind 7 30 > th dose independent sin 10 NA
158 130.09 wind 9 270 > th dose dependent rect. 16 19
173 130.90 wind 9 270 > th dose independent rect. 16 4
204 131.45 wind 9 270 > th dose independent rect. 16 19
211 131.74 wind 7 30 < th dose independent sin 10 NA
256 132.46 wind 5 10 > th dose dependent rect. 18 18
323 133.23 wind 7 30 > th dose independent rect. 11 10
432 134.46 wind 7 30 < th dose independent rect. 23 23
459 134.73 wind 7 30 < th dose independent rect. 12 23
535 135.18 wind 7 720 < th dose independent rect. 5 9
575 135.33 wind 7 270 < th dose independent rect. 9 23
576 135.35 wind 7 30 > th dose independent no NA NA
590 135.42 wind 3 720 > th dose dependent rect. 9 3
629 135.63 wind 5 720 > th dose dependent rect. 11 1
672 136.00 wind 1 720 > th dose dependent rect. 11 1
689 136.21 wind 5 720 > th dose independent rect. 9 3
692 136.23 wind 7 30 < th dose independent no NA NA
717 136.39 wind 7 720 > th dose independent rect. 11 1
752 136.61 atmosphere 995 14400 > th dose independent rect. 12 1
804 136.89 wind 9 720 < th dose independent rect. 9 15
849 137.09 atmosphere 1005 30 > th dose dependent rect. 19 1
855 137.13 wind 9 720 < th dose independent rect. 2 15
904 137.32 wind 9 720 < th dose dependent rect. 5 9
920 137.40 wind 7 30 < th dose independent rect. 12 20
968 137.62 wind 7 4320 < th dose independent rect. 19 1
990 137.76 wind 7 30 < th dose independent rect. 9 23