Os07g0675100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectin methylesterase isoform alpha (EC 3.1.1.11) (Fragment).
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Os07g0675100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectin methylesterase isoform alpha (EC 3.1.1.11) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 528.74 | 1.08 | 3.79 | -2.15 | 0.112 | 3.74 | -1.47 | -11.9 | -0.446 | 16.1 | 0.801 | 94 | 3.98 | 0.583 |
| 540.56 | 1.08 | 3.76 | -1.7 | 0.000297 | 2.72 | 1.21 | -- | -0.506 | 3.48 | 1.111 | 77 | 4.1 | 0.713 |
| 534.18 | 1.08 | 3.79 | -2.11 | 0.117 | 3.68 | -- | -10.4 | -0.454 | 16.9 | 0.8 | 92 | 3.98 | 0.556 |
| 537.94 | 1.08 | 3.74 | -1.69 | 0.022 | 2.53 | -- | -- | -0.441 | 14.8 | 0.7 | 90 | 4.07 | 0.471 |
| 534.54 | 1.08 | 3.79 | -2.13 | -- | 3.61 | -- | -10.6 | -0.465 | -- | 0.8293 | 92 | 3.98 | 0.55 |
| 619.03 | 1.17 | 3.76 | -1.56 | 0.346 | -- | 2.01 | -- | -0.568 | 4.63 | -- | -- | -- | -- |
| 629.53 | 1.17 | 3.77 | -1.57 | 0.367 | -- | -- | -- | -0.578 | 5.2 | -- | -- | -- | -- |
| 537.06 | 1.08 | 3.74 | -1.68 | -- | 2.54 | -- | -- | -0.434 | -- | 1.11 | 92 | 4.07 | 0.478 |
| 612.49 | 1.15 | 3.69 | -- | 0.0755 | 2.36 | -- | -- | -0.272 | 14.6 | 1.089 | 92 | 3.97 | 0.557 |
| 636.57 | 1.18 | 3.77 | -1.56 | -- | -- | -- | -- | -0.569 | -- | -- | -- | -- | -- |
| 694.65 | 1.23 | 3.73 | -- | 0.34 | -- | -- | -- | -0.403 | 5.37 | -- | -- | -- | -- |
| 612.85 | 1.15 | 3.7 | -- | -- | 2.33 | -- | -- | -0.276 | -- | 1.065 | 92 | 3.97 | 0.556 |
| 700.67 | 1.24 | 3.73 | -- | -- | -- | -- | -- | -0.396 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 545.23 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 2 | 545.92 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 546.02 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 17 | 548.19 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 18 | 548.60 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 34 | 553.12 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 52 | 558.13 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 55 | 560.82 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 68 | 561.42 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 71 | 562.17 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 86 | 563.72 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 104 | 564.13 | humidity | 90 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 118 | 564.94 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 148 | 565.46 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 186 | 567.34 | humidity | 90 | 90 | > th | dose independent | rect. | 4 | 1 |
| 271 | 570.50 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 4 | 1 |
| 278 | 570.71 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 282 | 570.86 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 283 | 570.86 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 308 | 571.18 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 1 |
| 309 | 571.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 14 |
| 320 | 571.45 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 8 |
| 329 | 571.58 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 356 | 572.30 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 377 | 572.41 | wind | 3 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 378 | 572.47 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 379 | 572.49 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 384 | 572.55 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 391 | 572.61 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 399 | 572.72 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 402 | 572.72 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 546 | 574.13 | humidity | 70 | 1440 | < th | dose dependent | sin | 12 | NA |
| 638 | 574.75 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 669 | 574.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 678 | 574.97 | humidity | 60 | 1440 | > th | dose independent | sin | 12 | NA |
| 680 | 575.01 | humidity | 60 | 1440 | < th | dose independent | sin | 12 | NA |
| 682 | 575.03 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 701 | 575.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 735 | 575.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 757 | 576.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 782 | 576.17 | temperature | 25 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 904 | 577.30 | wind | 9 | 90 | < th | dose independent | rect. | 5 | 23 |
| 905 | 577.31 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 924 | 577.56 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |