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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0193200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectin methylesterase 8 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0446) R2 : 0.675
β1 : -0.967 (0.205) R2dD : 0.0311 R2D : 0.115
β2 : 3.01 (0.143) R2dC : 0.626 R2C : 0.0484
β3 : -1.89 (0.122) R2dE : 0.362 R2E : -0.208
β4 : -5.25 (0.481) R2dD*C : 0.108 R2D*C : 0.103
β5 : 3.75 (0.615) R2dD*E : 0.0572 R2D*E : 0.104
γ1 : 0.171 (0.101) R2dN8 : 0.0037 R2N8 : -0.0157
σ : 0.768
deviance : 267.42
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_____
C
peak time of C : 15.3
E
wheather : temperature
threshold : 24
memory length : 803
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.77
open length of G : 3.33

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
267.42 0.768 3.4 -0.967 3.01 -1.89 -5.25 3.75 0.171 15.3 24 803 6.77 3.33
302.93 0.811 3.46 -1.43 2.86 -1.66 -5.25 -- 0.0379 15 23.97 820 6.73 3.33
353 0.875 3.44 -1.11 2.97 -1.87 -- 3.37 0.168 15.3 24.09 819 6.73 3.47
342.06 0.861 3.51 -1.64 2.99 -1.89 -- -- -0.0245 15.2 23.91 815 6.98 3.1
567.38 1.11 3.4 -0.994 -- -1.54 -- 3.44 0.151 -- 23.9 1550 6.74 3.37
424.24 0.966 3.61 -2.36 1.59 -- -4.83 -- -0.564 15 -- -- -- --
501.71 1.05 3.62 -2.47 1.57 -- -- -- -0.593 15 -- -- -- --
583.26 1.12 3.51 -1.75 -- -1.59 -- -- -0.131 -- 23.9 1565 7.18 3.08
425.59 0.961 3.46 -- 3.14 -1.99 -- -- 0.134 15.1 24 801 7.02 3.03
643.43 1.19 3.63 -2.53 -- -- -- -- -0.633 -- -- -- -- --
662.25 1.2 3.56 -- 1.62 -- -- -- -0.318 15 -- -- -- --
633.02 1.17 3.48 -- -- -2.15 -- -- 0.171 -- 22.99 2945 7.32 3.26
812.93 1.33 3.56 -- -- -- -- -- -0.352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.58 temperature 20 720 > th dose dependent rect. 7 4
2 291.67 temperature 25 720 > th dose independent rect. 7 4
32 307.93 temperature 10 270 > th dose dependent rect. 6 15
74 313.80 temperature 25 720 < th dose independent rect. 4 9
84 314.65 temperature 25 720 < th dose independent rect. 6 7
94 315.99 temperature 25 720 < th dose independent rect. 7 4
102 316.79 temperature 20 720 > th dose dependent sin 4 NA
112 318.27 temperature 30 720 < th dose dependent rect. 4 10
167 323.49 temperature 10 30 > th dose dependent rect. 16 21
171 323.89 temperature 10 10 > th dose dependent rect. 7 15
191 325.18 temperature 25 30 > th dose dependent rect. 16 21
242 328.10 temperature 30 270 < th dose dependent rect. 11 4
267 329.67 temperature 10 270 > th dose dependent rect. 15 20
275 330.06 temperature 30 270 < th dose independent rect. 11 4
286 330.74 temperature 30 270 < th dose dependent rect. 10 6
290 330.99 temperature 30 270 < th dose independent rect. 13 1
304 332.02 temperature 30 720 < th dose dependent sin 3 NA
369 334.59 temperature 10 720 > th dose dependent rect. 24 17
429 337.08 temperature 10 720 > th dose dependent rect. 24 13
466 338.30 temperature 25 720 > th dose independent sin 3 NA
505 339.62 temperature 15 270 > th dose independent rect. 14 21
538 340.44 temperature 25 720 < th dose independent sin 3 NA
570 341.25 temperature 15 30 > th dose independent rect. 16 21
577 341.42 temperature 25 720 < th dose dependent rect. 6 1
591 341.78 temperature 10 30 > th dose dependent rect. 16 23
741 345.07 temperature 15 270 > th dose independent rect. 16 18
752 345.32 humidity 60 43200 > th dose independent rect. 18 6
766 345.68 humidity 60 43200 < th dose independent rect. 18 6
779 346.01 humidity 70 43200 < th dose dependent rect. 19 2
871 347.76 temperature 30 10 < th dose independent rect. 12 4
877 347.90 temperature 25 90 > th dose independent rect. 7 5
887 348.13 wind 3 43200 < th dose dependent rect. 21 1
896 348.25 temperature 25 10 > th dose dependent rect. 14 23
903 348.41 temperature 30 10 < th dose independent rect. 12 6
942 349.26 wind 9 30 < th dose independent rect. 16 21
963 349.60 atmosphere 1015 30 < th dose independent rect. 16 21
983 349.96 wind 3 43200 < th dose dependent rect. 20 3
987 350.06 temperature 25 90 > th dose independent rect. 7 14