Os02g0783000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectin methylesterase 5 (Fragment).
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Os02g0783000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectin methylesterase 5 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 267.09 | 0.768 | 2.92 | -0.221 | 0.0558 | 1.47 | 1.42 | 10.5 | -0.244 | 17 | 90.26 | 10 | 6 | 1.98 |
| 269.4 | 0.77 | 2.93 | -0.243 | 0.0519 | 4.52 | 1.06 | -- | -0.236 | 16.6 | 95 | 3 | 7.26 | 0.93 |
| 271.58 | 0.768 | 2.91 | -0.185 | 0.0729 | 1.45 | -- | 10.6 | -0.241 | 15.5 | 91.54 | 10 | 6.01 | 2.89 |
| 272.34 | 0.774 | 2.92 | -0.234 | 0.0636 | 4.41 | -- | -- | -0.231 | 14.7 | 95 | 3 | 7.26 | 0.93 |
| 271.77 | 0.768 | 2.91 | -0.217 | -- | 1.17 | -- | 11 | -0.246 | -- | 91.6 | 10 | 6.02 | 4.87 |
| 309 | 0.824 | 2.93 | -0.162 | 0.0476 | -- | 0.715 | -- | -0.25 | 14.8 | -- | -- | -- | -- |
| 310.45 | 0.825 | 2.93 | -0.146 | 0.087 | -- | -- | -- | -0.247 | 10.7 | -- | -- | -- | -- |
| 272.57 | 0.772 | 2.93 | -0.236 | -- | 4.4 | -- | -- | -0.233 | -- | 92.93 | 3 | 6.66 | 4.41 |
| 273.77 | 0.775 | 2.92 | -- | 0.0679 | 4.35 | -- | -- | -0.205 | 14.6 | 95 | 3 | 7.26 | 0.93 |
| 310.91 | 0.824 | 2.93 | -0.147 | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
| 311 | 0.825 | 2.92 | -- | 0.0882 | -- | -- | -- | -0.231 | 10.8 | -- | -- | -- | -- |
| 274.04 | 0.774 | 2.92 | -- | -- | 4.34 | -- | -- | -0.207 | -- | 92.93 | 3 | 6.66 | 4.41 |
| 311.49 | 0.824 | 2.92 | -- | -- | -- | -- | -- | -0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 267.18 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 6 | 2 |
| 3 | 267.77 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 11 | 268.83 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 268.88 | humidity | 90.0 | 10 | > th | dose independent | rect. | 6 | 2 |
| 30 | 271.57 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 6 | 9 |
| 57 | 278.31 | radiation | 1.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 59 | 278.31 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 66 | 278.81 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 6 | 2 |
| 91 | 282.12 | radiation | 10.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 139 | 284.95 | wind | 7.0 | 90 | > th | dose dependent | rect. | 24 | 10 |
| 151 | 285.81 | radiation | 10.0 | 90 | < th | dose independent | rect. | 6 | 9 |
| 241 | 288.52 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 9 |
| 277 | 289.32 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 21 |
| 291 | 289.91 | humidity | 60.0 | 720 | > th | dose independent | rect. | 24 | 10 |
| 297 | 290.15 | wind | 3.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 312 | 290.41 | wind | 5.0 | 90 | > th | dose independent | rect. | 24 | 1 |
| 315 | 290.42 | wind | 5.0 | 90 | > th | dose dependent | rect. | 24 | 1 |
| 326 | 290.52 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 21 |
| 331 | 290.61 | wind | 7.0 | 90 | > th | dose independent | rect. | 24 | 10 |
| 333 | 290.64 | humidity | 60.0 | 270 | > th | dose independent | rect. | 23 | 12 |
| 337 | 290.66 | humidity | 60.0 | 720 | > th | dose independent | rect. | 8 | 3 |
| 338 | 290.66 | humidity | 50.0 | 720 | > th | dose independent | rect. | 22 | 14 |
| 371 | 291.15 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 381 | 291.25 | radiation | 10.0 | 90 | < th | dose independent | rect. | 12 | 3 |
| 387 | 291.34 | radiation | 30.0 | 30 | < th | dose independent | rect. | 12 | 15 |
| 408 | 291.67 | wind | 1.0 | 720 | > th | dose independent | rect. | 23 | 5 |
| 471 | 292.27 | humidity | 50.0 | 720 | > th | dose independent | rect. | 17 | 18 |
| 479 | 292.35 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 21 |
| 483 | 292.35 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 21 |
| 488 | 292.40 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 22 | 15 |
| 489 | 292.40 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 501 | 292.49 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 504 | 292.49 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 530 | 292.63 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 538 | 292.70 | radiation | 20.0 | 90 | < th | dose independent | rect. | 21 | 12 |
| 560 | 292.86 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 22 | 6 |
| 563 | 292.86 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 22 | 6 |
| 604 | 293.11 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 19 |
| 606 | 293.11 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 609 | 293.13 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 6 | 5 |
| 613 | 293.13 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 656 | 293.28 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 659 | 293.28 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 3 |
| 679 | 293.28 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 682 | 293.28 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 767 | 293.60 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 769 | 293.60 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 779 | 293.71 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 21 | 12 |
| 786 | 293.75 | radiation | 30.0 | 30 | < th | dose independent | rect. | 5 | 22 |
| 793 | 293.82 | wind | 1.0 | 720 | > th | dose independent | rect. | 24 | 1 |
| 809 | 293.91 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 7 | 1 |
| 846 | 293.91 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 890 | 293.96 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 902 | 294.04 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 905 | 294.05 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 13 | 14 |
| 920 | 294.11 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 934 | 294.19 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 4 | 10 |
| 949 | 294.25 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 950 | 294.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 12 |
| 953 | 294.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 959 | 294.28 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 11 |
| 970 | 294.32 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 972 | 294.32 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 988 | 294.39 | humidity | 70.0 | 90 | > th | dose independent | rect. | 21 | 11 |
| 989 | 294.39 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 5 | 1 |