Os08g0450100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectinesterase (EC 3.1.1.11) (Fragment).
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Os08g0450100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectinesterase (EC 3.1.1.11) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 764.5 | 1.3 | 4.37 | -0.615 | 3.29 | -3.85 | -0.37 | -2 | 0.452 | 23.8 | 30.97 | 85 | 15.1 | 12.2 |
| 771.72 | 1.29 | 4.36 | -0.647 | 3.34 | -3.7 | -0.719 | -- | 0.475 | 23.8 | 31.78 | 84 | 15.2 | 12.1 |
| 764.61 | 1.29 | 4.37 | -0.586 | 3.32 | -3.86 | -- | -2.38 | 0.448 | 23.8 | 31.1 | 84 | 15.1 | 12.2 |
| 778.68 | 1.3 | 4.39 | -0.734 | 3.31 | -3.72 | -- | -- | 0.437 | 23.8 | 31.38 | 81 | 15.2 | 12.1 |
| 898.11 | 1.4 | 4.27 | -0.31 | -- | -2.74 | -- | -3.46 | 0.535 | -- | 83.49 | 2820 | 17 | 9 |
| 899.48 | 1.41 | 4.28 | -0.342 | 1.47 | -- | -1.01 | -- | 0.729 | 0.973 | -- | -- | -- | -- |
| 903.78 | 1.41 | 4.27 | -0.306 | 1.47 | -- | -- | -- | 0.734 | 0.979 | -- | -- | -- | -- |
| 894.45 | 1.39 | 4.28 | -1.08 | -- | -2.84 | -- | -- | 0.341 | -- | 104.1 | 2827 | 17.3 | 8.93 |
| 793.2 | 1.31 | 4.37 | -- | 3.27 | -3.59 | -- | -- | 0.502 | 23.8 | 31.59 | 82 | 15.2 | 12.1 |
| 1038.56 | 1.51 | 4.25 | -0.251 | -- | -- | -- | -- | 0.763 | -- | -- | -- | -- | -- |
| 906.24 | 1.41 | 4.27 | -- | 1.47 | -- | -- | -- | 0.768 | 0.97 | -- | -- | -- | -- |
| 906.65 | 1.4 | 4.28 | -- | -- | -2.49 | -- | -- | 0.454 | -- | 115.6 | 2824 | 18.9 | 7.13 |
| 1040.21 | 1.51 | 4.24 | -- | -- | -- | -- | -- | 0.791 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 767.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 3 | 770.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 13 |
| 5 | 772.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 12 | 774.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 13 | 774.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 18 | 12 |
| 26 | 780.48 | wind | 5 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 32 | 781.46 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 71 | 786.19 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 88 | 786.88 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 9 |
| 93 | 787.62 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 108 | 788.37 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 128 | 788.88 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 12 |
| 133 | 789.13 | wind | 3 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 136 | 789.28 | temperature | 30 | 90 | < th | dose dependent | sin | 14 | NA |
| 141 | 789.70 | temperature | 30 | 10 | < th | dose dependent | sin | 13 | NA |
| 143 | 789.79 | temperature | 25 | 270 | < th | dose dependent | sin | 16 | NA |
| 147 | 789.96 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 158 | 790.86 | temperature | 10 | 270 | > th | dose dependent | sin | 14 | NA |
| 162 | 791.10 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 166 | 791.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 195 | 792.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 196 | 792.96 | temperature | 10 | 90 | > th | dose dependent | sin | 12 | NA |
| 230 | 794.63 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 252 | 794.94 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 264 | 795.35 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 268 | 795.58 | wind | 3 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 289 | 796.46 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 296 | 796.77 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 318 | 796.90 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 320 | 796.94 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 323 | 797.00 | temperature | 30 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 324 | 797.01 | humidity | 60 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 370 | 797.28 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 397 | 797.44 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 465 | 798.25 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 14 |
| 471 | 798.29 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 589 | 799.37 | temperature | 30 | 1440 | > th | dose dependent | sin | 11 | NA |
| 617 | 799.81 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 652 | 800.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 674 | 800.22 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 763 | 801.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 818 | 802.69 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 15 |
| 841 | 803.27 | humidity | 50 | 4320 | < th | dose independent | rect. | 11 | 6 |
| 887 | 803.44 | humidity | 50 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 998 | 804.15 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |