BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0186000 Os07g0186000|AK121423
(122 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U92541 246 3e-66
Os07g0186000 Similar to Thioredoxin h isoform 1 246 3e-66
Os05g0508500 Similar to Thioredoxin H 143 2e-35
Os09g0401200 Similar to HSP associated protein like 118 1e-27
Os03g0800700 Similar to Thioredoxin H-type 5 (TRX-H-5) 117 2e-27
Os07g0190800 Similar to Thioredoxin h 117 2e-27
Os12g0281300 Similar to Pi-ta protein 112 7e-26
Os01g0168200 Similar to Thioredoxin-like protein 111 1e-25
Os05g0169000 Similar to Thioredoxin-like protein 106 4e-24
Os05g0480200 Thioredoxin domain 2 containing protein 103 2e-23
AK110198 99 5e-22
Os01g0913000 Similar to Thioredoxin F-type 2, chloroplast p... 73 4e-14
Os12g0188700 Similar to Thioredoxin (TRX) 72 6e-14
Os04g0629500 Similar to Thioredoxin h 72 1e-13
Os01g0963400 Thioredoxin family protein 70 4e-13
Os02g0639900 Similar to Thioredoxin M-type, chloroplast pre... 69 5e-13
Os04g0430800 Thioredoxin family protein 67 2e-12
Os10g0500700 Glutaredoxin-related protein family protein 67 3e-12
Os04g0676100 Similar to Thioredoxin X, chloroplast precursor 66 5e-12
Os04g0530600 Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M) 65 8e-12
>U92541
Length = 122
Score = 246 bits (627), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA 60
MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA
Sbjct: 1 MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA 60
Query: 61 VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASA 120
VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASA
Sbjct: 61 VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASA 120
Query: 121 SA 122
SA
Sbjct: 121 SA 122
>Os07g0186000 Similar to Thioredoxin h isoform 1
Length = 122
Score = 246 bits (627), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA 60
MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA
Sbjct: 1 MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA 60
Query: 61 VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASA 120
VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASA
Sbjct: 61 VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASA 120
Query: 121 SA 122
SA
Sbjct: 121 SA 122
>Os05g0508500 Similar to Thioredoxin H
Length = 121
Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 86/110 (78%)
Query: 5 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLK 64
EG VIA H+ DE+ Q+ +A A K+V+IDFTASWCGPCR IAPVFA+ AKK AVFLK
Sbjct: 11 EGTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLK 70
Query: 65 VDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114
VDVDELK +AE+++VEAMPTFLF+K+G D+VVGA KD+L + + H+
Sbjct: 71 VDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLELHMA 120
>Os09g0401200 Similar to HSP associated protein like
Length = 317
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 75/109 (68%)
Query: 4 EEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL 63
++G VIA H+ E D ++ A ++V++ FTA+WCGPCRFI PV A+K VFL
Sbjct: 206 KDGDVIAIHSSSELDTKLKAASSLSRLVVLYFTAAWCGPCRFIGPVCKSLAEKHRNVVFL 265
Query: 64 KVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112
KVD+DEL VA ++NV ++P+F F+++G E DKVVGA K+ L+ + +H
Sbjct: 266 KVDIDELNSVAYRWNVSSVPSFFFVRNGKEIDKVVGADKNGLERKVAQH 314
>Os03g0800700 Similar to Thioredoxin H-type 5 (TRX-H-5)
Length = 134
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 8 VIACHNKDEFDAQMTKAK-EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVD 66
V+A H+ +D Q K K+++IDF+A+WCGPCRFI P F + A +F AVF K+D
Sbjct: 23 VVAVHSTATWDEQWGAHKSNPNKLIVIDFSATWCGPCRFIEPAFKDMAGRFADAVFFKID 82
Query: 67 VDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118
VDEL EVA ++ VEAMPTF+ IK G E +VVGA+KD+L+ + + ++++
Sbjct: 83 VDELSEVARQWKVEAMPTFVLIKGGKEVSRVVGAKKDELERKVNMFISSSSS 134
>Os07g0190800 Similar to Thioredoxin h
Length = 138
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
Query: 2 AAEEG---VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP 58
A EEG V+A H+K ++D K K+V+IDF+ASWCGPC+ + PVF E A +F
Sbjct: 14 AGEEGGESAVVAVHSKAKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFT 73
Query: 59 GAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109
FLKVDVDEL EVA + VEAMPTF+ + G E ++VGA KD+L+ TI
Sbjct: 74 DVAFLKVDVDELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKDELEKTI 124
>Os12g0281300 Similar to Pi-ta protein
Length = 1033
Score = 112 bits (280), Expect = 7e-26, Method: Composition-based stats.
Identities = 54/114 (47%), Positives = 78/114 (68%), Gaps = 3/114 (2%)
Query: 5 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLK 64
EG VI H ++F M++AK++ K+V+I FT S C R+IAP F EYAK+F GAVF+K
Sbjct: 915 EGTVIVPHTMEQFALHMSQAKQSHKLVVIQFTTSRCPASRYIAPAFTEYAKEFAGAVFIK 974
Query: 65 VDV--DELKEVAEKYNVEAM-PTFLFIKDGAEADKVVGARKDDLQNTIVKHVGA 115
V+V DEL+ V + Y++E + PTF F+KDG + DK+ GA K+ L+ I +H +
Sbjct: 975 VNVDSDELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGANKELLRAKIRRHTAS 1028
>Os01g0168200 Similar to Thioredoxin-like protein
Length = 131
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 79/115 (68%), Gaps = 4/115 (3%)
Query: 6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV 65
G V NK+ +D ++ +A + GK+VI +F+A+WCGPCR IAPV+AE ++ +P +FL +
Sbjct: 21 GNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTYPQFMFLTI 80
Query: 66 DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASA 120
DVDEL + + +++ A PTF F+K+G + DK+VGA K +L+ K V A A SA
Sbjct: 81 DVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELE----KKVAALADSA 131
>Os05g0169000 Similar to Thioredoxin-like protein
Length = 132
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 74/104 (71%)
Query: 6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV 65
G V +K+++D ++ +A + GK+V+ +F+ASWCGPCR IAP++AE +K +P +FL +
Sbjct: 22 GNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLMFLTI 81
Query: 66 DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109
DVD+L + + +++ A PTF FIK+ + DK+VGA K +L+ +
Sbjct: 82 DVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKV 125
>Os05g0480200 Thioredoxin domain 2 containing protein
Length = 135
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 66/101 (65%)
Query: 6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV 65
G V ++ +D M + E GK V++ F+A WC PCR AP+FAE + K+P VF+ V
Sbjct: 20 GNVTLVTDQKNWDNTMEEVAEHGKTVVLKFSAIWCTPCRNAAPLFAELSLKYPDIVFVSV 79
Query: 66 DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQ 106
DVDE+ E+ +Y+V A PTF+F+K+ E DK+VG +DLQ
Sbjct: 80 DVDEMPELVTQYDVRATPTFIFMKNNEEIDKLVGGNHEDLQ 120
>AK110198
Length = 961
Score = 99.4 bits (246), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 16 EFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAE 75
EFDA++ A K+V++DF A WCGPC+ IAPVF + + P FLKVDVD ++ VA+
Sbjct: 10 EFDAELQAA--GSKLVVVDFHALWCGPCKVIAPVFQQLVTRHPNVTFLKVDVDRVQAVAQ 67
Query: 76 KYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112
+Y V AMPTFLF+K+ D + GA + L + +H
Sbjct: 68 RYRVRAMPTFLFLKNKNVVDTLQGADPNRLTALVKQH 104
>Os01g0913000 Similar to Thioredoxin F-type 2, chloroplast precursor (TRX-F2)
Length = 187
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 13 NKDEFDAQMTKAKEAG-KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDE-L 70
NKD F K AG KVV++D WCGPC+ +AP F E ++K VFLK+D ++
Sbjct: 86 NKDTF---WPIVKSAGPKVVVLDMYTQWCGPCKVMAPKFQEMSEKDQDVVFLKLDCNQDN 142
Query: 71 KEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109
K +A++ ++ +PTF +KDG +V GA+ D+L I
Sbjct: 143 KSLAKELGIKVVPTFKILKDGKVVKEVTGAKLDELIQAI 181
>Os12g0188700 Similar to Thioredoxin (TRX)
Length = 172
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIK 89
V+++F A WCGPCR IAPV E AK++ G + KV+ D+ +A Y + ++PT L K
Sbjct: 86 VLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFK 145
Query: 90 DGAEADKVVGA-RKDDLQNTIVKHVGA 115
+G + + V+GA K L I K+V +
Sbjct: 146 NGEKKESVIGAVPKTTLATIIDKYVSS 172
>Os04g0629500 Similar to Thioredoxin h
Length = 133
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 8 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDV 67
V+ ++ +D + +A G V+ F ASWC + F E A+ P +FL VDV
Sbjct: 14 VVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYVDV 73
Query: 68 DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAAS 119
D+++ V+ K V+AMPTF IKD +K+VGA D+++ K V A+A S
Sbjct: 74 DDVQSVSSKLGVKAMPTFFLIKDKEVVNKIVGANPDEVK----KMVDASAES 121
>Os01g0963400 Thioredoxin family protein
Length = 122
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 17 FDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAE 75
FD + K++ K V++DF A+WCGPC+++ P+ E ++K + +K+D ++ +A
Sbjct: 23 FDELLEKSE---KPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKYTSIAN 79
Query: 76 KYNVEAMPTFLFIKDGAEADKVVGA 100
+Y +EA+PTF+ K+G + GA
Sbjct: 80 RYQIEALPTFIIFKNGKPCHRFEGA 104
>Os02g0639900 Similar to Thioredoxin M-type, chloroplast precursor (TRX-M)
Length = 173
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIK 89
V+++F ASWCGPC+ I PV + +K++ G + K++ DE ++A ++ + ++PT + K
Sbjct: 87 VLVEFWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFK 146
Query: 90 DGAEADKVVGARKDD-LQNTIVKHVG 114
+G + D V+GA + L ++I K++G
Sbjct: 147 NGEKKDAVIGAVPESTLVSSIDKYIG 172
>Os04g0430800 Thioredoxin family protein
Length = 266
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 25 KEAGKV-VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAM 82
+ AG + V+I+F ASWCGPCR + + E A+++ G + K+D D+ +VA Y++E +
Sbjct: 29 RRAGDIPVLIEFWASWCGPCRMVHRIVDEIAQEYAGRIKCYKLDTDDYPQVATSYSIERI 88
Query: 83 PTFLFIKDGAEADKVVGA 100
PT L KDG + + G
Sbjct: 89 PTVLLFKDGEKTHSITGT 106
>Os10g0500700 Glutaredoxin-related protein family protein
Length = 384
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 33 IDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGA 92
+ F A+WC + + VFA A F AVFL+V+ +E E++E Y V A+P F+F+K+G
Sbjct: 25 VHFWAAWCEASKQMDEVFAHLAVDFSHAVFLRVEAEEQPEISEAYGVTAVPYFVFLKEGK 84
Query: 93 EADKVVGARKDDLQNTIVKHVGATAASASA 122
D + GA L N + K G + + SA
Sbjct: 85 TVDTLEGANPASLANKVAKLAGPASVAESA 114
>Os04g0676100 Similar to Thioredoxin X, chloroplast precursor
Length = 180
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLK 64
G + + EF+A++ ++ V++DF A WCGPCR IAPV A+++ G + +K
Sbjct: 66 GAAVRFIGQSEFEAEVLQSDLP---VLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIVK 122
Query: 65 VDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 103
+D D ++ E+Y V +P+ + KDG E V G+R++
Sbjct: 123 IDHDANPQLIEEYKVYGLPSLILFKDGKE---VPGSRRE 158
>Os04g0530600 Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M)
Length = 180
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIK 89
V++ + A+WCGPC+ I PV + +K++ G + K++ DE ++A +Y V ++PT + K
Sbjct: 94 VLVGYWATWCGPCKMIDPVVGKLSKEYEGKLKCYKLNTDENPDIASQYGVRSIPTMMIFK 153
Query: 90 DGAEADKVVGA 100
+G + D V+GA
Sbjct: 154 NGEKKDAVIGA 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,768,815
Number of extensions: 135518
Number of successful extensions: 333
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 20
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)