Os02g0639900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin M-type, chloroplast precursor (TRX-M).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0639900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Thioredoxin M-type, chloroplast precursor (TRX-M).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.26 | 0.254 | 12.3 | 1.36 | 1.13 | 0.366 | -0.91 | 0.195 | 0.178 | 21.1 | 27 | 281 | -- | -- |
| 29.31 | 0.252 | 12.3 | 1.32 | 1.13 | 0.377 | -0.895 | -- | 0.167 | 21.1 | 27.06 | 276 | -- | -- |
| 32 | 0.263 | 12.3 | 1.38 | 1.15 | 0.344 | -- | 0.116 | 0.172 | 21.1 | 26.9 | 239 | -- | -- |
| 31.7 | 0.262 | 12.3 | 1.39 | 1.2 | 0.345 | -- | -- | 0.188 | 21.1 | 26.73 | 160 | -- | -- |
| 77.56 | 0.41 | 12.3 | 0.978 | -- | 1.02 | -- | -0.91 | -0.114 | -- | 25.9 | 604 | -- | -- |
| 34.9 | 0.277 | 12.3 | 1.42 | 1.26 | -- | -0.827 | -- | 0.24 | 20.4 | -- | -- | -- | -- |
| 37.04 | 0.285 | 12.3 | 1.45 | 1.27 | -- | -- | -- | 0.24 | 20.3 | -- | -- | -- | -- |
| 78.93 | 0.414 | 12.3 | 1.16 | -- | 0.958 | -- | -- | -0.0574 | -- | 25.8 | 591 | -- | -- |
| 77.56 | 0.41 | 12.3 | -- | 1.15 | 0.557 | -- | -- | -0.0192 | 21.7 | 26.7 | 189 | -- | -- |
| 126.01 | 0.525 | 12.2 | 1.44 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 92.38 | 0.45 | 12.3 | -- | 1.26 | -- | -- | -- | 0.0783 | 20.4 | -- | -- | -- | -- |
| 112.82 | 0.495 | 12.3 | -- | -- | 1.14 | -- | -- | -0.232 | -- | 25.9 | 618 | -- | -- |
| 180.79 | 0.628 | 12.3 | -- | -- | -- | -- | -- | 0.0663 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 6 |
| 5 | 26.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 8 | 26.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 10 | 26.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 26 | 26.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 43 | 26.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 53 | 26.99 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 59 | 27.02 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 3 |
| 60 | 27.02 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 11 |
| 61 | 27.02 | temperature | 25 | 720 | < th | dose dependent | sin | 2 | NA |
| 73 | 27.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 75 | 27.10 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 99 | 27.19 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 139 | 27.32 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 158 | 27.38 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 219 | 27.53 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 9 |
| 227 | 27.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 295 | 27.68 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 342 | 27.78 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 11 |
| 382 | 27.86 | temperature | 25 | 720 | > th | dose independent | sin | 3 | NA |
| 399 | 27.88 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 609 | 28.16 | temperature | 25 | 720 | < th | dose independent | sin | 3 | NA |
| 651 | 28.21 | temperature | 20 | 720 | < th | dose dependent | rect. | 4 | 1 |