BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0639900 Os02g0639900|AK099517
(173 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0639900 Similar to Thioredoxin M-type, chloroplast pre... 277 3e-75
Os04g0530600 Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M) 201 2e-52
Os12g0188700 Similar to Thioredoxin (TRX) 127 4e-30
Os04g0430800 Thioredoxin family protein 100 4e-22
Os01g0963400 Thioredoxin family protein 69 2e-12
Os04g0676100 Similar to Thioredoxin X, chloroplast precursor 67 5e-12
Os05g0508500 Similar to Thioredoxin H 66 1e-11
U92541 65 2e-11
Os07g0186000 Similar to Thioredoxin h isoform 1 65 2e-11
>Os02g0639900 Similar to Thioredoxin M-type, chloroplast precursor (TRX-M)
Length = 173
Score = 277 bits (708), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/147 (91%), Positives = 134/147 (91%)
Query: 27 QRRLLPQCRGVRAAPVVRLRSGRARGVSVVCAAQGQETSFQVPDVTKSTWQXXXXXXXXX 86
QRRLLPQCRGVRAAPVVRLRSGRARGVSVVCAAQGQETSFQVPDVTKSTWQ
Sbjct: 27 QRRLLPQCRGVRAAPVVRLRSGRARGVSVVCAAQGQETSFQVPDVTKSTWQSLVVESELP 86
Query: 87 XXXXFWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFK 146
FWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFK
Sbjct: 87 VLVEFWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFK 146
Query: 147 NGEKKDAVIGAVPESTLVSSIDKYIGR 173
NGEKKDAVIGAVPESTLVSSIDKYIGR
Sbjct: 147 NGEKKDAVIGAVPESTLVSSIDKYIGR 173
>Os04g0530600 Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M)
Length = 180
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/150 (65%), Positives = 114/150 (76%), Gaps = 8/150 (5%)
Query: 31 LPQCRGVRAAPVVRLRSGRARG-------VSVVCAAQGQETSFQVPDVTKSTWQXXXXXX 83
+P RG+R +R SG A SVVCA QGQ+TS QVP+VTKSTWQ
Sbjct: 32 VPPSRGIRYQ-ALRADSGFAGNRRGGGRGASVVCAVQGQDTSIQVPEVTKSTWQSLVMES 90
Query: 84 XXXXXXXFWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMM 143
+WA+WCGPCKMIDPV+GKLSKEYEGKL CYKLNTDENPDIA+Q+G+RSIPTMM
Sbjct: 91 ELPVLVGYWATWCGPCKMIDPVVGKLSKEYEGKLKCYKLNTDENPDIASQYGVRSIPTMM 150
Query: 144 IFKNGEKKDAVIGAVPESTLVSSIDKYIGR 173
IFKNGEKKDAVIGAVPESTL++SI+K++ R
Sbjct: 151 IFKNGEKKDAVIGAVPESTLIASIEKFVER 180
>Os12g0188700 Similar to Thioredoxin (TRX)
Length = 172
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 72/81 (88%)
Query: 91 FWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEK 150
FWA WCGPC+MI PVI +L+KEY GK+ C K+NTD++P+IAT +GIRSIPT+++FKNGEK
Sbjct: 90 FWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEK 149
Query: 151 KDAVIGAVPESTLVSSIDKYI 171
K++VIGAVP++TL + IDKY+
Sbjct: 150 KESVIGAVPKTTLATIIDKYV 170
>Os04g0430800 Thioredoxin family protein
Length = 266
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 59/77 (76%)
Query: 91 FWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEK 150
FWASWCGPC+M+ ++ ++++EY G++ CYKL+TD+ P +AT + I IPT+++FK+GEK
Sbjct: 40 FWASWCGPCRMVHRIVDEIAQEYAGRIKCYKLDTDDYPQVATSYSIERIPTVLLFKDGEK 99
Query: 151 KDAVIGAVPESTLVSSI 167
++ G +P++ +S I
Sbjct: 100 THSITGTLPKAVYISGI 116
>Os01g0963400 Thioredoxin family protein
Length = 122
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 52/78 (66%)
Query: 91 FWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEK 150
F+A+WCGPC+ + P++ ++S++ K+ K++T++ IA ++ I ++PT +IFKNG+
Sbjct: 38 FYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKYTSIANRYQIEALPTFIIFKNGKP 97
Query: 151 KDAVIGAVPESTLVSSID 168
GA+P + L+ I+
Sbjct: 98 CHRFEGALPANQLIQQIE 115
>Os04g0676100 Similar to Thioredoxin X, chloroplast precursor
Length = 180
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 43/60 (71%)
Query: 91 FWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEK 150
F A WCGPC++I PV+ ++EYEG+L K++ D NP + ++ + +P++++FK+G++
Sbjct: 92 FVADWCGPCRLIAPVVDWAAEEYEGRLKIVKIDHDANPQLIEEYKVYGLPSLILFKDGKE 151
>Os05g0508500 Similar to Thioredoxin H
Length = 121
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 91 FWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEK 150
F ASWCGPC++I PV L+K++ + K++ DE IA QF + ++PT + K G+
Sbjct: 41 FTASWCGPCRIIAPVFADLAKKHTNAV-FLKVDVDELKPIAEQFSVEAMPTFLFMKEGDV 99
Query: 151 KDAVIGAVPESTLVSSIDKYIG 172
KD V+GA+ + L S ++ ++
Sbjct: 100 KDRVVGAMKDE-LASKLELHMA 120
>U92541
Length = 122
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 91 FWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEK 150
F ASWCGPC+ I PV + +K++ G + K++ DE ++A ++ + ++PT + K+G +
Sbjct: 35 FTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAE 93
Query: 151 KDAVIGAVPESTLVSSIDKYIG 172
D V+GA + L ++I K++G
Sbjct: 94 ADKVVGARKDD-LQNTIVKHVG 114
>Os07g0186000 Similar to Thioredoxin h isoform 1
Length = 122
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 91 FWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEK 150
F ASWCGPC+ I PV + +K++ G + K++ DE ++A ++ + ++PT + K+G +
Sbjct: 35 FTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAE 93
Query: 151 KDAVIGAVPESTLVSSIDKYIG 172
D V+GA + L ++I K++G
Sbjct: 94 ADKVVGARKDD-LQNTIVKHVG 114
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,532,564
Number of extensions: 155632
Number of successful extensions: 377
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 9
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)