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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0676100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thioredoxin X, chloroplast precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.3 (0.0256) R2 : 0.694
β1 : -0.961 (0.0937) R2dD : 0.0732 R2D : 0.066
β2 : 1.86 (0.062) R2dC : 0.604 R2C : 0.613
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.267 (0.0546) R2dN8 : 0.0215 R2N8 : 0.00766
σ : 0.481
deviance : 105.53
__
_____
C
peak time of C : 14
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.96 0.443 14.3 -1 0.909 -0.99 -0.944 -1.08 -0.317 15.4 15.01 115 -- --
91.31 0.445 14.3 -1.01 0.849 -1 0.123 -- -0.335 14.7 14 162 -- --
89.89 0.442 14.3 -1.01 0.849 -1 -- -0.579 -0.306 15.1 13.85 149 -- --
91.24 0.445 14.3 -1.01 0.807 -1.04 -- -- -0.32 15.1 13.88 151 -- --
95.99 0.456 14.3 -1.01 -- -1.59 -- -0.461 -0.323 -- 8.365 229 -- --
104.43 0.479 14.3 -0.978 1.86 -- 0.541 -- -0.271 14 -- -- -- --
105.53 0.481 14.3 -0.961 1.86 -- -- -- -0.267 14 -- -- -- --
97.06 0.459 14.3 -1.01 -- -1.59 -- -- -0.324 -- 7.97 229 -- --
117.34 0.505 14.3 -- 0.798 -1.02 -- -- -0.192 15.2 10.33 162 -- --
313.71 0.828 14.3 -1.04 -- -- -- -- -0.311 -- -- -- -- --
129.87 0.533 14.2 -- 1.88 -- -- -- -0.16 14 -- -- -- --
123.25 0.517 14.3 -- -- -1.61 -- -- -0.213 -- 10 219 -- --
342.15 0.863 14.3 -- -- -- -- -- -0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.80 temperature 10.0 270 > th dose dependent rect. 6 9
3 84.99 radiation 1.0 270 > th dose independent rect. 6 10
4 85.13 radiation 1.0 270 > th dose independent rect. 4 12
16 85.32 temperature 15.0 270 > th dose independent rect. 16 14
18 86.03 radiation 1.0 270 > th dose independent sin 2 NA
19 86.08 temperature 15.0 270 > th dose independent rect. 6 10
20 86.14 radiation 40.0 270 < th dose dependent rect. 15 15
33 86.32 temperature 20.0 90 > th dose independent rect. 1 6
34 86.38 atmosphere 995.0 270 > th dose independent rect. 16 14
39 86.78 radiation 30.0 270 < th dose independent rect. 15 15
44 86.95 temperature 15.0 10 > th dose dependent rect. 7 9
45 86.95 radiation 10.0 270 < th dose dependent rect. 1 18
47 87.03 precipitation 0.1 270 < th dose independent rect. 6 10
48 87.03 precipitation 0.1 270 < th dose dependent rect. 6 10
51 87.10 wind 9.0 270 < th dose independent rect. 6 10
55 87.15 temperature 15.0 720 > th dose dependent rect. 19 2
56 87.15 radiation 10.0 270 < th dose dependent rect. 1 13
60 87.22 radiation 30.0 90 < th dose dependent rect. 13 18
65 87.31 temperature 15.0 90 > th dose dependent rect. 20 11
66 87.33 humidity 90.0 90 < th dose independent rect. 7 10
68 87.35 radiation 10.0 270 < th dose dependent rect. 24 20
70 87.36 atmosphere 1015.0 270 < th dose independent rect. 6 10
73 87.39 wind 9.0 270 < th dose independent rect. 16 14
88 87.56 temperature 20.0 10 > th dose independent rect. 1 6
98 87.67 temperature 20.0 90 > th dose independent rect. 3 4
116 87.92 temperature 15.0 90 > th dose dependent rect. 1 6
134 88.08 temperature 25.0 4320 < th dose independent rect. 4 2
140 88.15 temperature 20.0 10 > th dose dependent rect. 1 6
164 88.36 radiation 10.0 270 < th dose dependent sin 4 NA
177 88.42 temperature 20.0 30 > th dose independent rect. 20 11
182 88.46 temperature 15.0 90 > th dose dependent rect. 22 9
198 88.58 radiation 10.0 90 < th dose independent rect. 3 19
214 88.66 radiation 20.0 90 < th dose dependent rect. 3 19
231 88.76 radiation 1.0 270 < th dose independent sin 3 NA
235 88.79 temperature 25.0 4320 > th dose independent rect. 4 2
263 88.89 temperature 20.0 10 > th dose independent rect. 3 4
271 88.92 radiation 1.0 270 < th dose independent rect. 2 13
274 88.93 radiation 10.0 90 < th dose independent rect. 1 22
294 89.03 radiation 10.0 270 < th dose independent rect. 1 18
308 89.06 temperature 20.0 270 > th dose independent rect. 3 1
315 89.08 temperature 20.0 10 > th dose dependent rect. 3 4
357 89.18 precipitation 0.1 270 < th dose independent rect. 16 14
358 89.18 precipitation 0.1 270 < th dose dependent rect. 16 14
389 89.28 humidity 80.0 10 > th dose independent rect. 2 19
390 89.28 humidity 80.0 10 > th dose independent rect. 2 21
391 89.28 temperature 30.0 10 < th dose dependent sin 12 NA
424 89.38 atmosphere 1000.0 270 > th dose independent rect. 1 5
441 89.41 temperature 15.0 270 > th dose dependent rect. 3 1
445 89.43 temperature 25.0 4320 > th dose independent rect. 1 6
456 89.45 radiation 10.0 90 < th dose independent rect. 13 20
491 89.54 atmosphere 995.0 270 > th dose independent rect. 6 9
492 89.54 radiation 10.0 90 < th dose independent rect. 17 16
493 89.54 radiation 10.0 90 < th dose independent rect. 15 18
499 89.55 wind 1.0 90 > th dose independent rect. 7 20
508 89.58 radiation 40.0 270 < th dose independent rect. 11 9
517 89.62 radiation 10.0 270 < th dose independent rect. 1 6
534 89.66 humidity 50.0 90 > th dose independent rect. 17 14
555 89.71 temperature 30.0 270 < th dose dependent rect. 17 9
564 89.73 temperature 25.0 4320 < th dose independent rect. 1 6
565 89.73 radiation 10.0 90 < th dose independent rect. 3 6
573 89.75 radiation 10.0 10 < th dose independent rect. 4 19
581 89.76 radiation 20.0 90 < th dose dependent rect. 9 23
592 89.81 humidity 80.0 10 > th dose independent sin 3 NA
594 89.81 temperature 25.0 30 > th dose dependent rect. 6 1
618 89.86 radiation 20.0 10 < th dose dependent rect. 10 22
619 89.87 atmosphere 1000.0 270 > th dose independent rect. 24 7
638 89.91 humidity 70.0 90 > th dose dependent rect. 1 20
648 89.94 wind 7.0 270 < th dose independent rect. 21 14
660 89.96 radiation 10.0 10 < th dose independent rect. 2 21
663 89.96 radiation 20.0 10 < th dose dependent rect. 2 21
682 90.00 radiation 40.0 10 < th dose dependent rect. 12 11
704 90.05 temperature 10.0 10 > th dose dependent rect. 23 17
707 90.06 humidity 80.0 10 > th dose independent rect. 2 12
719 90.08 atmosphere 1000.0 270 > th dose independent rect. 2 3
720 90.08 humidity 80.0 10 > th dose independent rect. 2 10
754 90.12 radiation 10.0 90 < th dose dependent sin 0 NA
772 90.15 radiation 20.0 90 < th dose dependent rect. 15 23
773 90.16 humidity 80.0 90 > th dose independent rect. 2 13
775 90.16 precipitation 0.1 270 < th dose independent rect. 6 19
776 90.16 precipitation 0.1 270 < th dose dependent rect. 6 19
787 90.18 atmosphere 1010.0 30 < th dose independent rect. 6 1
822 90.21 temperature 10.0 90 > th dose dependent rect. 22 17
833 90.23 atmosphere 1000.0 270 > th dose independent rect. 1 19
850 90.25 humidity 70.0 90 > th dose dependent rect. 3 18
863 90.27 temperature 25.0 1440 > th dose dependent rect. 4 3
871 90.28 humidity 70.0 30 > th dose dependent sin 3 NA
872 90.28 radiation 20.0 90 < th dose dependent no NA NA
873 90.28 humidity 70.0 90 > th dose dependent rect. 1 14
942 90.37 precipitation 0.1 270 < th dose independent rect. 5 21
945 90.37 precipitation 0.1 270 < th dose dependent rect. 5 21
951 90.38 humidity 70.0 90 > th dose dependent rect. 1 16
995 90.44 atmosphere 995.0 270 > th dose independent rect. 11 10